RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ESPNLQ6ZVH7 1005 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 RNF166Q96A37 237 aaPredicted RBP12.61□□□□□ -0.39
CUX1-209ENST00000487284 SMIM19Q96E16 107 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 ADGRG7Q96K78 797 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 HDHD5Q9BXW7 423 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 SLC25A18Q9H1K4 315 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 AKIP1Q9NQ31 210 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 MRM2Q9UI43 246 aaKnown RBP12.61□□□□□ -0.39
CUX1-209ENST00000487284 SVILO95425 2214 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 IGKV1D-43A0A0B4J1Z2 117 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SLC35F4A4IF30 521 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 H0YC42 278 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ZNF593O00488 134 aaPredicted RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 SC5DO75845 299 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 HRGP04196 525 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 TACSTD2P09758 323 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 GDI2P50395 445 aaKnown RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 SLC3A1Q07837 685 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 LY6DQ14210 128 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 HIST3H3Q16695 136 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 PCK2Q16822 640 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 TEX30Q5JUR7 227 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 THEM4Q5T1C6 240 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 PCSK4Q6UW60 755 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 FAM220AQ7Z4H9 259 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SIAH3Q8IW03 269 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 TEX19Q8NA77 164 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 NEIL3Q8TAT5 605 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 FNDC8Q8TC99 324 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ASB17Q8WXJ9 295 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 FOXN4Q96NZ1 517 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 RBP7Q96R05 134 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 UCN2Q96RP3 112 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SRXN1Q9BYN0 137 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 BARHL1Q9BZE3 327 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 KCNN2Q9H2S1 579 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 GALNT8Q9NY28 637 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 KLHL9Q9P2J3 617 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 KCNG2Q9UJ96 466 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 A0A075B6Q4 140 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 TRGV5A0A0B4J1U4 118 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 CD8B2A6NJW9 211 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ERVH48-1M5A8F1 160 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SMAD9O15198 467 aaKnown RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 UPK3AO75631 287 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 CDRT1O95170 752 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 IGHG3P01860 377 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 KRT8P05787 483 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 OR8G3PP0DMU2 310 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 CD8BP10966 210 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 POU3F2P20265 443 aaPredicted RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 RPS27P42677 84 aaKnown RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 CLRN1P58418 232 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ADAM8P78325 824 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 CAMK2DQ13557 499 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 INSL4Q14641 139 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SLC17A1Q14916 467 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ZNF829Q3KNS6 432 aaPredicted RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 HBMQ6B0K9 141 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 CREB3L2Q70SY1 520 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 UBQLNLQ8IYU4 475 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 MS4A15Q8N5U1 240 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 ZNF454Q8N9F8 522 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 OR9K2Q8NGE7 335 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 OR2V1Q8NHB1 315 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 S100ZQ8WXG8 99 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 GHSRQ92847 366 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SLC25A46Q96AG3 418 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 OR8B4Q96RC9 309 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 AMELYQ99218 206 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 TTYH2Q9BSA4 534 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SF3B5Q9BWJ5 86 aaKnown RBP12.6□□□□□ -0.39
CUX1-209ENST00000487284 LDAHQ9H6V9 325 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 EXO5Q9H790 373 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 PLGRKTQ9HBL7 147 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SNTG1Q9NSN8 517 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 SPRR3Q9UBC9 169 aa12.6□□□□□ -0.39
CUX1-209ENST00000487284 IGSF10Q6WRI0 2623 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 TRBV2A0A0J9YWF9 115 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 ZNF726A6NNF4 738 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 CLDN25C9JDP6 229 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 PSMD9O00233 223 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 EIF1AYO14602 144 aaKnown RBP12.59□□□□□ -0.39
CUX1-209ENST00000487284 GPRIN2O60269 458 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 SPARCP09486 303 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 EDNRAP25101 427 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 SDC2P34741 201 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 PSMB10P40306 273 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 LHX2P50458 406 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 RORCP51449 518 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 SUCLG1P53597 346 aaKnown RBP12.59□□□□□ -0.39
CUX1-209ENST00000487284 CLDN17P56750 224 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 ROM1Q03395 351 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 MEP1BQ16820 701 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 LIPNQ5VXI9 398 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 SLC18B1Q6NT16 456 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 SLC25A47Q6Q0C1 308 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 GLB1L2Q8IW92 636 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 MFSD4AQ8N468 514 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 YIPF7Q8N8F6 280 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms