RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KCTD14Q9BQ13 255 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-204ENST00000475218 FUZQ9BT04 418 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 BEX2Q9BXY8 128 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 C1orf198Q9H425 327 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 CDH20Q9HBT6 801 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 NDUFAF4Q9P032 175 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 TAAR3PQ9P1P4 343 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 STX18Q9P2W9 335 aaKnown RBP12.05□□□□□ -0.48
UPF3A-204ENST00000475218 EGFL7Q9UHF1 273 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 IMPA2O14732 288 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 TGFAP01135 160 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 LIMS1P48059 325 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 SEC23BQ15437 767 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 SGCAQ16586 387 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 TBC1D28Q2M2D7 210 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 MESTQ5EB52 335 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 UGT2A3Q6UWM9 527 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF730Q6ZMV8 503 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 FKBP9P1Q75LS8 142 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 PHC2Q8IXK0 858 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 KCNS2Q9ULS6 477 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 A0A1W2PPW3 197 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 GSTA4O15217 222 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 SNX3O60493 162 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 PTP4A3O75365 173 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 STOMP27105 288 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 SLC9A3P48764 834 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 CHN2P52757 468 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 KLF3P57682 345 aaPredicted RBP12.04□□□□□ -0.48
UPF3A-204ENST00000475218 THEM4Q5T1C6 240 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 THSD4Q6ZMP0 1018 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 RFPL4BQ6ZWI9 263 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 RNF148Q8N7C7 305 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 SPATA3Q8NHX4 192 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 SYNPRQ8TBG9 265 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 BCAS4Q8TDM0 211 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 HPS1Q92902 700 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 Q96M85 177 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 GPA33Q99795 319 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF416Q9BWM5 594 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 OR2H1Q9GZK4 316 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 SHARPINQ9H0F6 387 aa12.04□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF275Q9NSD4 429 aaPredicted RBP12.04□□□□□ -0.48
UPF3A-204ENST00000475218 TRBV4-1A0A0J9YWV2 114 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 IQCMA0A1B0GVH7 501 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 A0A1W2PRQ8 180 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 SLC22A23A1A5C7 686 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 C17orf100A8MU93 164 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 PHF1O43189 567 aaPredicted RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 PTHP01270 115 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 SEMG1P04279 462 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 LCKP06239 509 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 CST2P09228 141 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 LSP1P33241 339 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 MPV17P39210 176 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 OMPP47874 163 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 CDH15P55291 814 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 GNGT1P63211 74 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 SRSF2Q01130 221 aaKnown RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 HSF2Q03933 536 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 PLP2Q04941 152 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 CCNIQ14094 377 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 DGCR6Q14129 220 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 ANKDD1AQ495B1 522 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 OTPQ5XKR4 325 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 FAM205BPQ63HN1 556 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 CLDND2Q8NHS1 167 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 RDH5Q92781 318 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 FAM162AQ96A26 154 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 MARS2Q96GW9 593 aaKnown RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 FAM46AQ96IP4 442 aaKnown RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 DHRS1Q96LJ7 313 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 ANKRD19PQ9H560 264 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 CCNB1IP1Q9NPC3 277 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 HINT3Q9NQE9 182 aaKnown RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 DCAF13Q9NV06 445 aaKnown RBP12.03□□□□□ -0.48
UPF3A-204ENST00000475218 LPAR3Q9UBY5 353 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 SIGLEC7Q9Y286 467 aa12.03□□□□□ -0.48
UPF3A-204ENST00000475218 ICMTO60725 284 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 DIRAS1O95057 198 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 NGFP01138 241 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 IFNA2P01563 188 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 IGHV3-13P01766 116 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 CD14P08571 375 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 ACHEP22303 614 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 PRDX6P30041 224 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 IFNA8P32881 189 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 APLNRP35414 380 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 RAD52P43351 418 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 MRPS11P82912 194 aaKnown RBP12.02□□□□□ -0.48
UPF3A-204ENST00000475218 GLO1Q04760 184 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 HNRNPA0Q13151 305 aaKnown RBP12.02□□□□□ -0.48
UPF3A-204ENST00000475218 NKPD1Q17RQ9 610 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 CR1LQ2VPA4 569 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 ZBED5Q49AG3 693 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 SPATA46Q5T0L3 261 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 GLYATQ6IB77 296 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 OR1J2Q8NGS2 313 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 OR1J1Q8NGS3 322 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 CMTM5Q96DZ9 223 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms