RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SDC1P18827 310 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 PSMB5P28074 263 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 FOLR3P41439 243 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTBP60709 375 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 DCAF7P61962 342 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTA2P62736 377 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTG1P63261 375 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTG2P63267 376 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTC1P68032 377 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ACTA1P68133 377 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 SUN3Q8TAQ9 357 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 NT5CQ8TCD5 201 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 MMP26Q9NRE1 261 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 A6NNC1 897 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 COLCA2A8K830 154 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 TP53I11O14683 189 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 ZNF883P0CG24 379 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 SP9P0CG40 484 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 CRYBB2P43320 205 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 XKR7Q5GH72 579 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 OR2T2Q6IF00 324 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 MRPL41Q8IXM3 137 aaKnown RBP8.95□□□□□ -0.98
USP54-205ENST00000424265 FCRL4Q96PJ5 515 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 CHST5Q9GZS9 411 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 TCEAL2Q9H3H9 227 aaPredicted RBP8.95□□□□□ -0.98
USP54-205ENST00000424265 FGF21Q9NSA1 209 aa8.95□□□□□ -0.98
USP54-205ENST00000424265 MIA3Q5JRA6 1907 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 H0YIG0 161 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 IFNA6P05013 189 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 S1PR1P21453 382 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 RPS25P62851 125 aaKnown RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 PPIAP62937 165 aaKnown RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 ARL6IP1Q15041 203 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 IL20RBQ6UXL0 311 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 HORMAD2Q8N7B1 307 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 NAA11Q9BSU3 229 aaPredicted RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 NUMA1Q14980 2115 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 SLC25A12O75746 678 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 IL1RNP18510 177 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 CCKBRP32239 447 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 DNLZQ5SXM8 178 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 NCR3LG1Q68D85 454 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 IL22RA1Q8N6P7 574 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 CHTF18Q8WVB6 975 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 EIF5A2Q9GZV4 153 aaKnown RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 SOD1P00441 154 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 AGAP20933 346 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 EPHA2P29317 976 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 FOXA1P55317 472 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 RGS8P57771 180 aaPredicted RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 OR1D5P58170 312 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 DCDP81605 110 aaKnown RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 SHC2P98077 582 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 FAM53BQ14153 422 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 PRAMEF17Q5VTA0 474 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 REEP3Q6NUK4 255 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 BMP8AQ7Z5Y6 402 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ANGPTL5Q86XS5 388 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 OR2A1Q8NGT9 310 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 IP6K3Q96PC2 410 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 FEVQ99581 238 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 CLMPQ9H6B4 373 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 CBLN4Q9NTU7 201 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 A0A1B0GX78 115 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 TVP23AA6NH52 213 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 FMO6PO60774 539 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 LRP3O75074 770 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 SCRG1O75711 98 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 CBR3O75828 277 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ZNF432O94892 652 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 DCAF10Q5QP82 559 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ABHD17CQ6PCB6 329 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ZNF440Q8IYI8 595 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 LMF1Q96S06 567 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ATF6BQ99941 703 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 SMOC1Q9H4F8 434 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 ZNF430Q9H8G1 570 aaPredicted RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 SEC61A2Q9H9S3 476 aa8.94□□□□□ -0.98
USP54-205ENST00000424265 NUP210Q8TEM1 1887 aaPredicted RBP8.94□□□□□ -0.98
USP54-205ENST00000424265 CD8B2A6NJW9 211 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 TMEM238C9JI98 176 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 TNFSF14O43557 240 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 GPR75O95800 540 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 OPN1MWP04001 364 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 OPN1MW2P0DN77 364 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 OPN1MW3P0DN78 364 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 CD8BP10966 210 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 NME2P22392 152 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 LSM6P62312 80 aaKnown RBP8.93□□□□□ -0.98
USP54-205ENST00000424265 CXADRP78310 365 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 PNLIPRP3Q17RR3 467 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 ARHGAP11BQ3KRB8 267 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 CCSMST1Q4G0I0 132 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 OR5M3Q8NGP4 307 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 OR5R1Q8NH85 324 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 GEMIN6Q8WXD5 167 aaKnown RBP8.93□□□□□ -0.98
USP54-205ENST00000424265 PHYHIPLQ96FC7 376 aa8.93□□□□□ -0.98
USP54-205ENST00000424265 GSX1Q9H4S2 264 aaPredicted RBP8.93□□□□□ -0.98
USP54-205ENST00000424265 PPP1R3EQ9H7J1 279 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms