RNA–Protein interactions for RNA: ENST00000312989.11

PPP1CA-201, Transcript of protein phosphatase 1 catalytic subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene PPP1CA, Length 1,389 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1CA-201ENST00000312989 ELFN2Q5R3F8 820 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 C6orf52Q5T4I8 152 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 TMEM53Q6P2H8 277 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 OR4C15Q8NGM1 316 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 AKR7LQ8NHP1 331 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 FNDC8Q8TC99 324 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 FOXN4Q96NZ1 517 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 RBP7Q96R05 134 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 ZNF416Q9BWM5 594 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 OR2H1Q9GZK4 316 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 BPESC1Q9GZL8 116 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 TPK1Q9H3S4 243 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 C1orf198Q9H425 327 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 ACTR3BQ9P1U1 418 aa12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 FAM32AQ9Y421 112 aaKnown RBP12.51□□□□□ -0.41
PPP1CA-201ENST00000312989 RTTNQ86VV8 2226 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 LOC390937A0A1W2PQ73 354 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 UNC119BA6NIH7 251 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 B2RBV5 119 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 DCTN6O00399 190 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 AHCYL1O43865 530 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 CRLF1O75462 422 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 NCR1O76036 304 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 FABP3P05413 133 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 FPR3P25089 353 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 SDHAP31040 664 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 RRM2P31350 389 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 CDKN2AP42771 156 aaKnown RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 GSSP48637 474 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 PDLIM4P50479 330 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 HMGA2P52926 109 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 KRR1Q13601 381 aaKnown RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 RIN1Q13671 783 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 SGCAQ16586 387 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 GKAP1Q5VSY0 366 aaPredicted RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 OTPQ5XKR4 325 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 ZNF770Q6IQ21 691 aaPredicted RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 LCN8Q6JVE9 175 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 PGBD2Q6P3X8 592 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 CYP2R1Q6VVX0 501 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 RFPL4BQ6ZWI9 263 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 ZNF786Q8N393 782 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 NEU4Q8WWR8 484 aaPredicted RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 NSL1Q96IY1 281 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 ZNF570Q96NI8 536 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 SOX7Q9BT81 388 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 RNF121Q9H920 327 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 MYOZ1Q9NP98 299 aaPredicted RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 EMC7Q9NPA0 242 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 NDE1Q9NXR1 346 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 VNN3Q9NY84 501 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 GRHPRQ9UBQ7 328 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 FBXO9Q9UK97 447 aaPredicted RBP12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 JMJD1CQ15652 2540 aa12.5□□□□□ -0.41
PPP1CA-201ENST00000312989 ABCA1O95477 2261 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 ABCA2Q9BZC7 2435 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 LYNX1G3V0Z9 82 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 M0R233 179 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 TLX2O43763 284 aaPredicted RBP12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 GADD45GO95257 159 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 HPXP02790 462 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 LYNX1P0DP58 116 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 GAAP10253 952 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 APEHP13798 732 aaKnown RBP12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 DAOP14920 347 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 ITGA2P17301 1181 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 USF1P22415 310 aaPredicted RBP12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 STOMP27105 288 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 RPL4P36578 427 aaKnown RBP12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 UCP2P55851 309 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 GALK2Q01415 458 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 SPIBQ01892 262 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 TBC1D28Q2M2D7 210 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 GPR139Q6DWJ6 353 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 C1orf94Q6P1W5 598 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 DPY19L2P2Q6ZN68 376 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 CCDC197Q8NCU1 140 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 GTF3AQ92664 365 aaKnown RBP12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 BTBD10Q9BSF8 475 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 RAB1BQ9H0U4 201 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 SYT4Q9H2B2 425 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 OR51B6Q9H340 312 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 OR52D1Q9H346 318 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 REV1Q9UBZ9 1251 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 SPEF1Q9Y4P9 236 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 IER3IP1Q9Y5U9 82 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 LYVE1Q9Y5Y7 322 aa12.49□□□□□ -0.41
PPP1CA-201ENST00000312989 A0A1W2PPL8 197 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 LILRA1O75019 489 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 GMNNO75496 209 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 RP2O75695 350 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 MPZL1O95297 269 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 PPP1R3DO95685 299 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 TACSTD2P09758 323 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 MSR1P21757 451 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 CALB2P22676 271 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 RPS23P62266 143 aaKnown RBP12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 RFX4Q33E94 735 aa12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 RGS7BPQ6MZT1 257 aaPredicted RBP12.48□□□□□ -0.41
PPP1CA-201ENST00000312989 ZNF774Q6NX45 483 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms