RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 OR1J2Q8NGS2 313 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 RP9Q8TA86 221 aaKnown RBP8.32□□□□□ -1.08
VPS41-201ENST00000265745 ZNF519Q8TB69 540 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 C11orf40Q8WZ69 217 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 LZICQ8WZA0 190 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 RCN3Q96D15 328 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 BPIFA2Q96DR5 249 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 PRRC1Q96M27 445 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 BCL2L14Q9BZR8 327 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 LRMDAQ9H2I8 198 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 HINT3Q9NQE9 182 aaKnown RBP8.32□□□□□ -1.08
VPS41-201ENST00000265745 TAAR3PQ9P1P4 343 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 TMEFF2Q9UIK5 374 aaPredicted RBP8.32□□□□□ -1.08
VPS41-201ENST00000265745 GPR160Q9UJ42 338 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 ZNF346Q9UL40 294 aaKnown RBP8.32□□□□□ -1.08
VPS41-201ENST00000265745 HIF3AQ9Y2N7 669 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 AP3M1Q9Y2T2 418 aa8.32□□□□□ -1.08
VPS41-201ENST00000265745 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS41-201ENST00000265745 C17orf100A8MU93 164 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 WNT9BO14905 357 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 RP2O75695 350 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 RGS9O75916 674 aaPredicted RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 LCKP06239 509 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 IFI30P13284 250 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 MAKP20794 623 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 STOMP27105 288 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 IFNA8P32881 189 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 MAGEB1P43366 347 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 GPR6P46095 362 aaPredicted RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 YAP1P46937 504 aaKnown RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 KLF3P57682 345 aaPredicted RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 RPL27P61353 136 aaKnown RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 HSF2Q03933 536 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 LIPEQ05469 1076 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 FMODQ06828 376 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 CCNIQ14094 377 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 SGCAQ16586 387 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 NKPD1Q17RQ9 610 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 ALKBH6Q3KRA9 238 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 PABPC1L2AQ5JQF8 200 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 THEM4Q5T1C6 240 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 ARPINQ7Z6K5 226 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 NRMQ8IXM6 262 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 SYNPRQ8TBG9 265 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 NSMAFQ92636 917 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 YIPF5Q969M3 257 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 NABP1Q96AH0 204 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 POM121L2Q96KW2 1035 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 TSPAN32Q96QS1 320 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 RBP7Q96R05 134 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 ALG12Q9BV10 488 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 FNDC11Q9BVV2 318 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 KCNN2Q9H2S1 579 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 OR51B6Q9H340 312 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 ZNF275Q9NSD4 429 aaPredicted RBP8.31□□□□□ -1.08
VPS41-201ENST00000265745 MAN2C1Q9NTJ4 1040 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 SLCO1C1Q9NYB5 712 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 NKIRAS2Q9NYR9 191 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 RHCGQ9UBD6 479 aa8.31□□□□□ -1.08
VPS41-201ENST00000265745 LOC100509620A0A075B734 347 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 ELOA3CA0A087WX78 387 aaPredicted RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 GMNCA6NCL1 334 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 B4DSR2 109 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 J3KTA2 159 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 IGHV3-13P01766 116 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 IGHMP01871 453 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 IFNW1P05000 195 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 NR2C1P13056 603 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 ZNF32P17041 273 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 APLNRP35414 380 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 WNT5AP41221 380 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 DVL1P1P54792 670 aaPredicted RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 CTXN1P60606 82 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 CCL8P80075 99 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 PSG4Q00888 419 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 SRSF2Q01130 221 aaKnown RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 PRKCDQ05655 676 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 CD47Q08722 323 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 TOP3AQ13472 1001 aaPredicted RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 TRAM2Q15035 370 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 MOGQ16653 247 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 PCGF3Q3KNV8 242 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 FAM205BPQ63HN1 556 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 C8orf82Q6P1X6 216 aaPredicted RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 TMEM154Q6P9G4 183 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 MEX3DQ86XN8 651 aaKnown RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 RNF113BQ8IZP6 322 aaKnown RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 OFCC1Q8IZS5 231 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 CLDN22Q8N7P3 220 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 OR51A7Q8NH64 312 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 CLDND2Q8NHS1 167 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 FNDC8Q8TC99 324 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 HOPXQ9BPY8 73 aaPredicted RBP8.3□□□□□ -1.08
VPS41-201ENST00000265745 ZNF416Q9BWM5 594 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 CCNB1IP1Q9NPC3 277 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 TREM2Q9NZC2 230 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 TIMM10BQ9Y5J6 103 aa8.3□□□□□ -1.08
VPS41-201ENST00000265745 MALRD1Q5VYJ5 2156 aa8.29□□□□□ -1.08
VPS41-201ENST00000265745 TRAV27A0A087WT01 109 aa8.29□□□□□ -1.08
VPS41-201ENST00000265745 A0A087WUU8 490 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms