RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ELOVL3Q9HB03 270 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MMP25Q9NPA2 562 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 POLE3Q9NRF9 147 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MED12Q93074 2177 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 TNFRSF10CO14798 259 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ZNF749O43361 778 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 CTAG2O75638 210 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RP2O75695 350 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 WDPCPO95876 746 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RNH1P13489 461 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 GPR3P46089 330 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 FOXL2P58012 376 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SGCAQ16586 387 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 C2orf76Q3KRA6 126 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SLC35D3Q5M8T2 416 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ARHGAP40Q5TG30 622 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PRAMEF17Q5VTA0 474 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 NKAIN2Q5VXU1 208 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ZNF227Q86WZ6 799 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SPICQ8N5J4 248 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 DEFB119Q8N690 84 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MNTQ99583 582 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 G6PC3Q9BUM1 346 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PCED1AQ9H1Q7 454 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ESRP2Q9H6T0 727 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 LDAHQ9H6V9 325 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 FARSAQ9Y285 508 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 CLDN16Q9Y5I7 305 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 DCDC2BA2VCK2 349 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 GGT3PA6NGU5 568 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 EFCAB7A8K855 629 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 CCSO14618 274 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PRAMEF2O60811 474 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PNPP00491 289 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 HIST1H2ABP04908 130 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 CALCBP10092 127 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ACHEP22303 614 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SDHAP31040 664 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 IKZF1Q13422 519 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ZNF124Q15973 351 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 LIN54Q6MZP7 749 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RGS7BPQ6MZT1 257 aaPredicted RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 HIST3H2AQ7L7L0 130 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SLC36A1Q7Z2H8 476 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 CDC20BQ86Y33 519 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 OR2AK2Q8NG84 335 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 HIST1H2ACQ93077 130 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 LCORQ96JN0 433 aaPredicted RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 FOXQ1Q9C009 403 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 COMMD4Q9H0A8 199 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 NXF5Q9H1B4 397 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 STEAP1Q9UHE8 339 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 GPR160Q9UJ42 338 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MFSD2BA6NFX1 497 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 C17orf105B2RV13 164 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 PRAMEF26H0Y7S4 382 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 H7C417 338 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 KCNAB3O43448 404 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 MPZL1O95297 269 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 LDOC1O95751 146 aaPredicted RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 RLN2P04090 185 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 SPARCP09486 303 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 CTSEP14091 401 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 RBMS2Q15434 407 aaKnown RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 ATRAIDQ6UW56 229 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 ATG4DQ86TL0 474 aaPredicted RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 EXD3Q8N9H8 876 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 MTFP1Q9UDX5 166 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 CYP8B1Q9UNU6 501 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 F5H5P2 479 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 XRCC3O43542 346 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 HCRTR2O43614 444 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 OR2A4O95047 310 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 APEHP13798 732 aaKnown RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 CPN1P15169 458 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 ALOX5APP20292 161 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 DLX5P56178 289 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 DMWDQ09019 674 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 NKPD1Q17RQ9 610 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 SCGB2B2Q4G0G5 96 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 SLC6A19Q695T7 634 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 WBP2NLQ6ICG8 309 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 FAM160A2Q8N612 972 aaPredicted RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 LRRC75AQ8NAA5 344 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 OR51A2Q8NGJ7 313 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 GPR148Q8TDV2 347 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.07□□□□□ -0.96
LIG3-201ENST00000262327 SEC22AQ96IW7 307 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 OR2A7Q96R45 310 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 MFRPQ9BY79 579 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 POFUT1Q9H488 388 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 HIF3AQ9Y2N7 669 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 KIF26BQ2KJY2 2108 aa9.07□□□□□ -0.96
LIG3-201ENST00000262327 TRBV5-5A0A0J9YX44 114 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SLC22A23A1A5C7 686 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ALOX12BO75342 701 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 TNFP01375 233 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 IGHV4-34P06331 123 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 FABP1P07148 127 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ZNF28P17035 718 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms