RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS38	YLR360W	NOP14	Q99207	810 aa	Known RBP	4.69	□□□□□ -1.66
VPS38	YLR360W	PPR1	P07272	904 aa	Predicted RBP	4.68	□□□□□ -1.66
VPS38	YLR360W	SFL1	P20134	766 aa		4.68	□□□□□ -1.66
VPS38	YLR360W	PCL2	P25693	308 aa		4.68	□□□□□ -1.66
VPS38	YLR360W	YBR259W	P38338	688 aa		4.68	□□□□□ -1.66
VPS38	YLR360W	CHS7	P38843	316 aa		4.68	□□□□□ -1.66
VPS38	YLR360W	YNL193W	P53870	558 aa		4.68	□□□□□ -1.66
VPS38	YLR360W	MIH1	P23748	554 aa		4.67	□□□□□ -1.66
VPS38	YLR360W	SIC1	P38634	284 aa		4.67	□□□□□ -1.66
VPS38	YLR360W	YIR042C	P40586	236 aa		4.67	□□□□□ -1.66
VPS38	YLR360W	ATG33	Q06485	197 aa		4.67	□□□□□ -1.66
VPS38	YLR360W	GIN4	Q12263	1142 aa		4.67	□□□□□ -1.66
VPS38	YLR360W	RPL8A	P17076	256 aa	Known RBP	4.66	□□□□□ -1.66
VPS38	YLR360W	YEL1	P34225	687 aa		4.66	□□□□□ -1.66
VPS38	YLR360W	PPS1	P38148	807 aa		4.66	□□□□□ -1.66
VPS38	YLR360W	YBR053C	P38235	358 aa		4.66	□□□□□ -1.66
VPS38	YLR360W	GAD1	Q04792	585 aa		4.66	□□□□□ -1.66
VPS38	YLR360W	ADR1	P07248	1323 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	HMG1	P12683	1054 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	HIS7	P33734	552 aa	Known RBP	4.65	□□□□□ -1.67
VPS38	YLR360W	PCM1	P38628	557 aa	Known RBP	4.65	□□□□□ -1.67
VPS38	YLR360W	MIP6	P38760	659 aa	Known RBP	4.65	□□□□□ -1.67
VPS38	YLR360W	SDA1	P53313	767 aa	Known RBP	4.65	□□□□□ -1.67
VPS38	YLR360W	TEX1	P53851	422 aa	Known RBP	4.65	□□□□□ -1.67
VPS38	YLR360W	DNM1	P54861	757 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	COG8	Q04632	607 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	ADY4	Q05955	493 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	YLR001C	Q07895	862 aa		4.65	□□□□□ -1.67
VPS38	YLR360W	LAT1	P12695	482 aa	Known RBP	4.64	□□□□□ -1.67
VPS38	YLR360W	ADE2	P21264	571 aa	Known RBP	4.64	□□□□□ -1.67
VPS38	YLR360W	YKR018C	P36114	725 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	YJL163C	P46996	555 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	PCL10	P53124	433 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	MET13	P53128	600 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	UTP14	Q04500	899 aa	Known RBP	4.64	□□□□□ -1.67
VPS38	YLR360W	GUD1	Q07729	489 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	IRC13	Q08630	104 aa		4.64	□□□□□ -1.67
VPS38	YLR360W	APT2	P36973	181 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	MOH1	P38191	138 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	HLJ1	P48353	224 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	STB4	P50104	949 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	MUK1	Q02866	612 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	ACF2	Q12168	779 aa		4.63	□□□□□ -1.67
VPS38	YLR360W	CCR4	P31384	837 aa	Known RBP	4.62	□□□□□ -1.67
VPS38	YLR360W	OAR1	P35731	278 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	APL2	P36000	726 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS38	YLR360W	MNN4	P36044	1178 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	YHR112C	P38716	378 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	ECM1	P39715	212 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	UBA2	P52488	636 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	ARG5,6	Q01217	863 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	CTK1	Q03957	528 aa	Known RBP	4.62	□□□□□ -1.67
VPS38	YLR360W	OMS1	Q06668	471 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	ATG11	Q12527	1178 aa		4.62	□□□□□ -1.67
VPS38	YLR360W	TRZ1	P36159	838 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS38	YLR360W	HOS4	P40480	1083 aa		4.61	□□□□□ -1.67
VPS38	YLR360W	DAS1	P47005	663 aa		4.61	□□□□□ -1.67
VPS38	YLR360W	ARP4	P80428	489 aa		4.61	□□□□□ -1.67
VPS38	YLR360W	TIM44	Q01852	431 aa		4.61	□□□□□ -1.67
VPS38	YLR360W	MCH5	Q08777	521 aa		4.61	□□□□□ -1.67
VPS38	YLR360W	BCD1	P38772	366 aa		4.6	□□□□□ -1.67
VPS38	YLR360W	MTL1	P53214	551 aa		4.6	□□□□□ -1.67
VPS38	YLR360W	COX18	P53239	316 aa		4.6	□□□□□ -1.67
VPS38	YLR360W	LEE1	Q02799	301 aa	Known RBP	4.6	□□□□□ -1.67
VPS38	YLR360W	YGR161W-C	Q3E744	92 aa		4.6	□□□□□ -1.67
VPS38	YLR360W	FPR3	P38911	411 aa	Known RBP	4.59	□□□□□ -1.67
VPS38	YLR360W	MGS1	P40151	587 aa		4.59	□□□□□ -1.67
VPS38	YLR360W	YJR142W	P47173	342 aa		4.59	□□□□□ -1.67
VPS38	YLR360W	REC102	Q02721	264 aa		4.59	□□□□□ -1.67
VPS38	YLR360W	MCM21	Q06675	368 aa		4.59	□□□□□ -1.67
VPS38	YLR360W	ERG6	P25087	383 aa	Known RBP	4.58	□□□□□ -1.68
VPS38	YLR360W	MVD1	P32377	396 aa	Known RBP	4.58	□□□□□ -1.68
VPS38	YLR360W	APN2	P38207	520 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	YHL017W	P38745	532 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	PCL5	P38794	229 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	REV7	P38927	245 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	BAP3	P41815	604 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	UBC11	P52492	156 aa		4.58	□□□□□ -1.68
VPS38	YLR360W	BRE5	P53741	515 aa	Known RBP	4.58	□□□□□ -1.68
VPS38	YLR360W	GPD1	Q00055	391 aa	Known RBP	4.58	□□□□□ -1.68
VPS38	YLR360W	HBT1	Q07653	1046 aa	Known RBP	4.58	□□□□□ -1.68
VPS38	YLR360W	RNR1	P21524	888 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	TYS1	P36421	394 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	SSZ1	P38788	538 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	CCT3	P39077	534 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	FMP52	P40008	231 aa		4.57	□□□□□ -1.68
VPS38	YLR360W	YNL195C	P40168	261 aa		4.57	□□□□□ -1.68
VPS38	YLR360W	SET2	P46995	733 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	BFA1	P47113	574 aa		4.57	□□□□□ -1.68
VPS38	YLR360W	ISA1	Q07821	250 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	THI73	Q07904	523 aa		4.57	□□□□□ -1.68
VPS38	YLR360W	AIM44	Q99299	758 aa		4.57	□□□□□ -1.68
VPS38	YLR360W	HRP1	Q99383	534 aa	Known RBP	4.57	□□□□□ -1.68
VPS38	YLR360W	PYC1	P11154	1178 aa	Known RBP	4.56	□□□□□ -1.68
VPS38	YLR360W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
VPS38	YLR360W	HIR1	P32479	840 aa		4.56	□□□□□ -1.68
VPS38	YLR360W	PRP19	P32523	503 aa	Known RBP	4.56	□□□□□ -1.68
VPS38	YLR360W	YKR075C	P36155	307 aa		4.56	□□□□□ -1.68
VPS38	YLR360W	BRN1	P38170	754 aa		4.56	□□□□□ -1.68
VPS38	YLR360W	CBR1	P38626	284 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 49.6 ms