RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	UBC9	P50623	157 aa	Predicted RBP	4.24	□□□□□ -1.73
SEC4	YFL005W	KCS1	Q12494	1050 aa		4.24	□□□□□ -1.73
SEC4	YFL005W	MOH1	P38191	138 aa		4.23	□□□□□ -1.73
SEC4	YFL005W	RPN7	Q06103	429 aa	Known RBP	4.23	□□□□□ -1.73
SEC4	YFL005W	YTM1	Q12024	460 aa	Predicted RBP	4.23	□□□□□ -1.73
SEC4	YFL005W	NPC2	Q12408	173 aa		4.23	□□□□□ -1.73
SEC4	YFL005W	YLR149C	Q99296	730 aa		4.23	□□□□□ -1.73
SEC4	YFL005W	YKR018C	P36114	725 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	YKR051W	P36142	418 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	PZF1	P39933	429 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	GZF3	P42944	551 aa	Known RBP	4.22	□□□□□ -1.73
SEC4	YFL005W	UBA2	P52488	636 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	SLU7	Q02775	382 aa	Known RBP	4.22	□□□□□ -1.73
SEC4	YFL005W	AIM39	Q08223	395 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	SWM1	Q12379	170 aa		4.22	□□□□□ -1.73
SEC4	YFL005W	SAK1	P38990	1142 aa		4.21	□□□□□ -1.74
SEC4	YFL005W	RET2	P43621	546 aa		4.21	□□□□□ -1.74
SEC4	YFL005W	MTR3	P48240	250 aa	Predicted RBP	4.21	□□□□□ -1.74
SEC4	YFL005W	MUS81	Q04149	632 aa	Predicted RBP	4.21	□□□□□ -1.74
SEC4	YFL005W	LAS17	Q12446	633 aa		4.21	□□□□□ -1.74
SEC4	YFL005W	TMA17	Q12513	150 aa		4.21	□□□□□ -1.74
SEC4	YFL005W	Q0142	Q9ZZW4	58 aa		4.21	□□□□□ -1.74
SEC4	YFL005W	SEC21	P32074	935 aa	Known RBP	4.2	□□□□□ -1.74
SEC4	YFL005W	NGG1	P32494	702 aa		4.2	□□□□□ -1.74
SEC4	YFL005W	MIP6	P38760	659 aa	Known RBP	4.2	□□□□□ -1.74
SEC4	YFL005W	OAF1	P39720	1047 aa	Predicted RBP	4.2	□□□□□ -1.74
SEC4	YFL005W	CCT5	P40413	562 aa	Known RBP	4.2	□□□□□ -1.74
SEC4	YFL005W	FOL1	P53848	824 aa		4.2	□□□□□ -1.74
SEC4	YFL005W	ASI2	P53895	289 aa		4.2	□□□□□ -1.74
SEC4	YFL005W	TUB3	P09734	445 aa	Known RBP	4.19	□□□□□ -1.74
SEC4	YFL005W	KAR4	P25583	335 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	EUG1	P32474	517 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	MNN4	P36044	1178 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	DID4	P36108	232 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	MAL31	P38156	614 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	TDA3	P38758	523 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	VHR1	P40522	640 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	SNM1	P40993	198 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	PFA3	P42836	336 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	DUG1	P43616	481 aa	Known RBP	4.19	□□□□□ -1.74
SEC4	YFL005W	MNN11	P46985	422 aa	Known RBP	4.19	□□□□□ -1.74
SEC4	YFL005W	EXG2	P52911	562 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	PCL10	P53124	433 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	ORC4	P54791	529 aa		4.19	□□□□□ -1.74
SEC4	YFL005W	PFK1	P16861	987 aa	Known RBP	4.18	□□□□□ -1.74
SEC4	YFL005W	PRP4	P20053	465 aa	Known RBP	4.18	□□□□□ -1.74
SEC4	YFL005W	YBR071W	P38243	211 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	YGR153W	P48238	217 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	PKH1	Q03407	766 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	PEX19	Q07418	342 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	TRE2	Q08693	809 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	GPR1	Q12361	961 aa		4.18	□□□□□ -1.74
SEC4	YFL005W	YLR415C	O13578	112 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	HRR25	P29295	494 aa	Known RBP	4.17	□□□□□ -1.74
SEC4	YFL005W	SSZ1	P38788	538 aa	Known RBP	4.17	□□□□□ -1.74
SEC4	YFL005W	YJR039W	P47107	1121 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	YJR120W	P47157	116 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	YBP2	P53169	641 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	ECM9	Q02202	377 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	ASM4	Q05166	528 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	ENB1	Q08299	606 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	DCS2	Q12123	353 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	TRM11	Q12463	433 aa		4.17	□□□□□ -1.74
SEC4	YFL005W	YBR259W	P38338	688 aa		4.16	□□□□□ -1.74
SEC4	YFL005W	BFA1	P47113	574 aa		4.16	□□□□□ -1.74
SEC4	YFL005W	COG6	P53959	839 aa		4.16	□□□□□ -1.74
SEC4	YFL005W	ARP4	P80428	489 aa		4.16	□□□□□ -1.74
SEC4	YFL005W	GPD1	Q00055	391 aa	Known RBP	4.16	□□□□□ -1.74
SEC4	YFL005W	CAD1	P24813	409 aa	Known RBP	4.15	□□□□□ -1.75
SEC4	YFL005W	CTF13	P35203	478 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	SIC1	P38634	284 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	RPP1	P38786	293 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	HXT6	P39003	570 aa	Known RBP	4.15	□□□□□ -1.75
SEC4	YFL005W	HXT7	P39004	570 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	ECM1	P39715	212 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	BUL1	P48524	976 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	PRP31	P49704	494 aa	Predicted RBP	4.15	□□□□□ -1.75
SEC4	YFL005W	BRE5	P53741	515 aa	Known RBP	4.15	□□□□□ -1.75
SEC4	YFL005W	HFI1	Q12060	488 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	APM4	Q99186	491 aa		4.15	□□□□□ -1.75
SEC4	YFL005W	AEP2	P22136	580 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	YKR075C	P36155	307 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	GRX7	P38068	203 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	AKL1	P38080	1108 aa	Known RBP	4.14	□□□□□ -1.75
SEC4	YFL005W	BEM4	P39011	633 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	GPP2	P40106	250 aa	Known RBP	4.14	□□□□□ -1.75
SEC4	YFL005W	ATF1	P40353	525 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	SET2	P46995	733 aa	Known RBP	4.14	□□□□□ -1.75
SEC4	YFL005W	NIT2	P47016	307 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	MRPS35	P53292	345 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	ERG5	P54781	538 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	PTA1	Q01329	785 aa	Predicted RBP	4.14	□□□□□ -1.75
SEC4	YFL005W	YHM2	Q04013	314 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	RMP1	Q12530	201 aa		4.14	□□□□□ -1.75
SEC4	YFL005W	APL2	P36000	726 aa	Predicted RBP	4.13	□□□□□ -1.75
SEC4	YFL005W	APN2	P38207	520 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	ENP1	P38333	483 aa	Known RBP	4.13	□□□□□ -1.75
SEC4	YFL005W	GID8	P40208	455 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	NOP2	P40991	618 aa	Known RBP	4.13	□□□□□ -1.75
SEC4	YFL005W	STU2	P46675	888 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 8.1 ms