RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 ATP2B3Q16720 1220 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 BBXQ8WY36 941 aaPredicted RBP13.4□□□□□ -0.26
SHPRH-211ENST00000629427 TNPO1Q92973 898 aaKnown RBP13.4□□□□□ -0.26
SHPRH-211ENST00000629427 UBASH3AP57075 661 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 SLC39A6Q13433 755 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 NECAB1Q8N987 351 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 DDX23Q9BUQ8 820 aaKnown RBP13.4□□□□□ -0.26
SHPRH-211ENST00000629427 TMEM110-MUSTN1A8MSY1 372 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 HSP90AA4PQ58FG1 418 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 IMPG2Q9BZV3 1241 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 C6orf50Q9HD87 102 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 UBE2HP62256 183 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 ZC3H12CQ9C0D7 883 aaKnown RBP13.4□□□□□ -0.26
SHPRH-211ENST00000629427 PARP3Q9Y6F1 533 aa13.4□□□□□ -0.26
SHPRH-211ENST00000629427 RIMBP2O15034 1052 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 COPS6Q7L5N1 327 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 NEMFO60524 1076 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 ZNF165P49910 485 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 ZFYP08048 801 aaPredicted RBP13.39□□□□□ -0.27
SHPRH-211ENST00000629427 FBLN1P23142 703 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 ZSWIM4Q9H7M6 989 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 TFCP2L1Q9NZI6 479 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 CGNQ9P2M7 1197 aaKnown RBP13.39□□□□□ -0.27
SHPRH-211ENST00000629427 ZBTB21Q9ULJ3 1066 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 B4DLN1 442 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 MRPL12P52815 198 aaKnown RBP13.39□□□□□ -0.27
SHPRH-211ENST00000629427 TERF1P54274 439 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 SPAG5Q96R06 1193 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 SELENOOQ9BVL4 669 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 GNAQP50148 359 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 DDB1Q16531 1140 aa13.39□□□□□ -0.27
SHPRH-211ENST00000629427 POTEB2H3BUK9 544 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 RTCBQ9Y3I0 505 aaKnown RBP13.38□□□□□ -0.27
SHPRH-211ENST00000629427 PLB1Q6P1J6 1458 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 GOLGA6L9A6NEM1 432 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 AKR1B10O60218 316 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 POLD1P28340 1107 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 GJC1P36383 396 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 ARID5AQ03989 594 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 MCMDC2Q4G0Z9 681 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 AKNAD1Q5T1N1 836 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 CCDC155Q8N6L0 562 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 SIRT1Q96EB6 747 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 RBM27Q9P2N5 1060 aaKnown RBP13.38□□□□□ -0.27
SHPRH-211ENST00000629427 GRM8O00222 908 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 HSF2BPO75031 334 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 TAF12Q16514 161 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 GSTA5Q7RTV2 222 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 SMARCC1Q92922 1105 aaPredicted RBP13.38□□□□□ -0.27
SHPRH-211ENST00000629427 KIAA0586Q9BVV6 1533 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 TTC22Q5TAA0 569 aa13.38□□□□□ -0.27
SHPRH-211ENST00000629427 PTGS1P23219 599 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 SLC9C2Q5TAH2 1124 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 Q6ZUG5 572 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.37□□□□□ -0.277e-8■■□□□ 14.4
SHPRH-211ENST00000629427 RRP36Q96EU6 259 aaKnown RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 BIN2Q9UBW5 565 aaPredicted RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 FANCAO15360 1455 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 CKAP4Q07065 602 aaKnown RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 MAPK8IP2Q13387 824 aaPredicted RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 SPECC1LQ69YQ0 1117 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 DZIP3Q86Y13 1208 aaKnown RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 MAGEB6Q8N7X4 407 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 TBC1D2Q9BYX2 928 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 EEF2P13639 858 aaKnown RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 CEP112Q8N8E3 955 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 RAB3IL1Q8TBN0 382 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 JDP2Q8WYK2 163 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 DDX12PQ92771 950 aa13.37□□□□□ -0.27
SHPRH-211ENST00000629427 SCAF11Q99590 1463 aaKnown RBP13.37□□□□□ -0.27
SHPRH-211ENST00000629427 MARCKSP29966 332 aaPredicted RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 GIMAP6Q6P9H5 292 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 EHBP1Q8NDI1 1231 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 IQCGQ9H095 443 aaKnown RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 NCOA1Q15788 1441 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 FAM13AO94988 1023 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 LMOD1P29536 600 aaPredicted RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 ASIC1P78348 528 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 RHPN1Q8TCX5 695 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 BRF1Q92994 677 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 CTAGE1Q96RT6 745 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 GNG11P61952 73 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 NSD2O96028 1365 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 DENND4BO75064 1496 aaPredicted RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 SP4Q02446 784 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 C6orf163Q5TEZ5 329 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 CEP135Q66GS9 1140 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 PODXL2Q9NZ53 605 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 SBNO2Q9Y2G9 1366 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 CYLC1P35663 651 aaPredicted RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 FAM107BQ9H098 131 aa13.36□□□□□ -0.27
SHPRH-211ENST00000629427 NSFL1CQ9UNZ2 370 aaKnown RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 SETD1BQ9UPS6 1966 aaKnown RBP13.36□□□□□ -0.27
SHPRH-211ENST00000629427 BMP15O95972 392 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 KCNG4Q8TDN1 519 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 JAG2Q9Y219 1238 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 TPTE2Q6XPS3 522 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 MCM9Q9NXL9 1143 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 NPHP3Q7Z494 1330 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 ITSN2Q9NZM3 1697 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms