RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 CTIFO43310 598 aaKnown RBP24.03■■□□□ 1.44
NEK3-208ENST00000618534 MCMDC2Q4G0Z9 681 aa24.03■■□□□ 1.44
NEK3-208ENST00000618534 STOX1Q6ZVD7 989 aa24.03■■□□□ 1.44
NEK3-208ENST00000618534 C16orf45Q96MC5 204 aaPredicted RBP24.03■■□□□ 1.44
NEK3-208ENST00000618534 RGPD5Q99666 1765 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 FOSBP53539 338 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 UBE3BQ7Z3V4 1068 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 CLIP2Q9UDT6 1046 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 CFAP45Q9UL16 551 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 ATP2B3Q16720 1220 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 ANKRD13DQ6ZTN6 518 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 PDCL2Q8N4E4 241 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 ANKRD7Q92527 254 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 HAUS7Q99871 368 aa24.02■■□□□ 1.44
NEK3-208ENST00000618534 NFATC2IPQ8NCF5 419 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 SMARCC2Q8TAQ2 1214 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 CBX1P83916 185 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 FGD1P98174 961 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 CCDC144BQ3MJ40 725 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 LRP10Q7Z4F1 713 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 CCDC144CPQ8IYA2 1237 aa24.01■■□□□ 1.43
NEK3-208ENST00000618534 ZNF496Q96IT1 587 aaPredicted RBP24.01■■□□□ 1.43
NEK3-208ENST00000618534 FTOQ9C0B1 505 aaKnown RBP eCLIP24.01■■□□□ 1.43
NEK3-208ENST00000618534 ADD1P35611 737 aaKnown RBP24■■□□□ 1.43
NEK3-208ENST00000618534 RABL6Q3YEC7 729 aaPredicted RBP24■■□□□ 1.43
NEK3-208ENST00000618534 CACTINQ8WUQ7 758 aaKnown RBP24■■□□□ 1.43
NEK3-208ENST00000618534 SCN11AQ9UI33 1791 aa24■■□□□ 1.43
NEK3-208ENST00000618534 AFDNP55196 1824 aaKnown RBP24■■□□□ 1.43
NEK3-208ENST00000618534 C11orf57Q6ZUT1 292 aaPredicted RBP24■■□□□ 1.43
NEK3-208ENST00000618534 NSUN7Q8NE18 718 aaKnown RBP24■■□□□ 1.43
NEK3-208ENST00000618534 CCDC9Q9Y3X0 531 aaKnown RBP24■■□□□ 1.43
NEK3-208ENST00000618534 ERBB3P21860 1342 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 PFKFB2O60825 505 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 IQCB1Q15051 598 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 ANKLE2Q86XL3 938 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 USP16Q9Y5T5 823 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 MYH15Q9Y2K3 1946 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 LAMA4Q16363 1823 aa23.99■■□□□ 1.43
NEK3-208ENST00000618534 ATP5J2-PTCD1G3V325 749 aa23.98■■□□□ 1.43
NEK3-208ENST00000618534 PTCD1O75127 700 aaKnown RBP23.98■■□□□ 1.43
NEK3-208ENST00000618534 SLFNL1Q499Z3 407 aa23.98■■□□□ 1.43
NEK3-208ENST00000618534 LLPHQ9BRT6 129 aaKnown RBP23.98■■□□□ 1.43
NEK3-208ENST00000618534 GOLPH3LQ9H4A5 285 aa23.98■■□□□ 1.43
NEK3-208ENST00000618534 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.98■■□□□ 1.43
NEK3-208ENST00000618534 CTDNEP1O95476 244 aa23.98■■□□□ 1.43
NEK3-208ENST00000618534 CAVIN2O95810 425 aa23.98■■□□□ 1.43
NEK3-208ENST00000618534 CCAR1Q8IX12 1150 aaKnown RBP23.98■■□□□ 1.43
NEK3-208ENST00000618534 CDC25BP30305 580 aa23.97■■□□□ 1.43
NEK3-208ENST00000618534 APOBRQ0VD83 1088 aa23.97■■□□□ 1.43
NEK3-208ENST00000618534 NAA16Q6N069 864 aaPredicted RBP23.97■■□□□ 1.43
NEK3-208ENST00000618534 KBTBD3Q8NAB2 608 aa23.97■■□□□ 1.43
NEK3-208ENST00000618534 RAPGEF4Q8WZA2 1011 aa23.97■■□□□ 1.43
NEK3-208ENST00000618534 SH3TC1Q8TE82 1336 aa23.97■■□□□ 1.43
NEK3-208ENST00000618534 PTPDC1A2A3K4 754 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 GOLGA6L19H0YKK7 550 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 TNNT1P13805 278 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 A0A087WZG4 1122 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 PHKG2P15735 406 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 DHX32Q7L7V1 743 aaKnown RBP23.96■■□□□ 1.43
NEK3-208ENST00000618534 RCOR1Q9UKL0 485 aa23.96■■□□□ 1.43
NEK3-208ENST00000618534 SMTNL1A8MU46 457 aa23.95■■□□□ 1.43
NEK3-208ENST00000618534 ZSCAN20P17040 1043 aaPredicted RBP23.95■■□□□ 1.43
NEK3-208ENST00000618534 ZC3H6P61129 1189 aaKnown RBP23.95■■□□□ 1.42
NEK3-208ENST00000618534 STX1AQ16623 288 aa23.95■■□□□ 1.42
NEK3-208ENST00000618534 SARM1Q6SZW1 724 aa23.95■■□□□ 1.42
NEK3-208ENST00000618534 USP28Q96RU2 1077 aa23.95■■□□□ 1.42
NEK3-208ENST00000618534 ARFGEF2Q9Y6D5 1785 aa23.94■■□□□ 1.42
NEK3-208ENST00000618534 HMGB1P09429 215 aaKnown RBP23.94■■□□□ 1.42
NEK3-208ENST00000618534 CCT2P78371 535 aaKnown RBP23.94■■□□□ 1.42
NEK3-208ENST00000618534 NCBP1Q09161 790 aaKnown RBP23.94■■□□□ 1.42
NEK3-208ENST00000618534 TRPM3Q9HCF6 1732 aaPredicted RBP23.94■■□□□ 1.42
NEK3-208ENST00000618534 A0A087WWV3 80 aa23.94■■□□□ 1.42
NEK3-208ENST00000618534 PPFIA3O75145 1194 aa23.94■■□□□ 1.42
NEK3-208ENST00000618534 SNRPA1P09661 255 aaKnown RBP23.94■■□□□ 1.42
NEK3-208ENST00000618534 NLRP2Q9NX02 1062 aa23.94■■□□□ 1.42
NEK3-208ENST00000618534 A0A0G2JLW4 131 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 SPDYE4A6NLX3 237 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 GOLIM4O00461 696 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 CTAGE5O15320 804 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 U2AF2P26368 475 aaKnown RBP eCLIP23.93■■□□□ 1.422e-7■■□□□ 13
NEK3-208ENST00000618534 SNW1Q13573 536 aaKnown RBP23.93■■□□□ 1.42
NEK3-208ENST00000618534 ARID5BQ14865 1188 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 TPD52L1Q16890 204 aaPredicted RBP23.93■■□□□ 1.42
NEK3-208ENST00000618534 NCOA5Q9HCD5 579 aaKnown RBP23.93■■□□□ 1.42
NEK3-208ENST00000618534 PALLDQ8WX93 1383 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 CASP7P55210 303 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 DMTNQ08495 405 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 LMBR1LQ6UX01 489 aa23.93■■□□□ 1.42
NEK3-208ENST00000618534 CCDC73Q6ZRK6 1079 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 EXOSC10Q01780 885 aaKnown RBP23.92■■□□□ 1.42
NEK3-208ENST00000618534 KRT28Q7Z3Y7 464 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 LRRC8AQ8IWT6 810 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 TTC5Q8N0Z6 440 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 MRFAP1L1Q96HT8 127 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 PAG1Q9NWQ8 432 aa23.92■■□□□ 1.42
NEK3-208ENST00000618534 MEGF6O75095 1541 aa23.91■■□□□ 1.42
NEK3-208ENST00000618534 GUCY1B3Q02153 619 aa23.91■■□□□ 1.42
NEK3-208ENST00000618534 NEUROD6Q96NK8 337 aa23.91■■□□□ 1.42
NEK3-208ENST00000618534 NAP1L2Q9ULW6 460 aaPredicted RBP23.91■■□□□ 1.42
NEK3-208ENST00000618534 TATP17735 454 aaPredicted RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms