RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 A0A1B0GUL7 405 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 ERC2O15083 957 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 MSH5O43196 834 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 METTL24Q5JXM2 366 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 CCDC125Q86Z20 511 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 STK32BQ9NY57 414 aa17.45■□□□□ 0.38
USP39-220ENST00000613444 CDC5LQ99459 802 aaKnown RBP17.45■□□□□ 0.38
USP39-220ENST00000613444 MROH5Q6ZUA9 1318 aa17.44■□□□□ 0.38
USP39-220ENST00000613444 PDE8BO95263 885 aa17.44■□□□□ 0.38
USP39-220ENST00000613444 IGHMBP2P38935 993 aaKnown RBP17.44■□□□□ 0.38
USP39-220ENST00000613444 CELF1Q92879 486 aaKnown RBP17.44■□□□□ 0.38
USP39-220ENST00000613444 MPHOSPH8Q99549 860 aa17.44■□□□□ 0.38
USP39-220ENST00000613444 AKAP2Q9Y2D5 859 aa17.44■□□□□ 0.38
USP39-220ENST00000613444 ATP5JP18859 108 aa17.43■□□□□ 0.38
USP39-220ENST00000613444 MAP4K4O95819 1239 aaPredicted RBP17.43■□□□□ 0.38
USP39-220ENST00000613444 CRY2Q49AN0 593 aa17.43■□□□□ 0.38
USP39-220ENST00000613444 NEUROD6Q96NK8 337 aa17.43■□□□□ 0.38
USP39-220ENST00000613444 TRIM6-TRIM34B2RNG4 842 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 NPHP1O15259 732 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 FGFR2P21802 821 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 ANKRD18AQ8IVF6 992 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 AKAP11Q9UKA4 1901 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 ADORA1P30542 326 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 ST5P78524 1137 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 ATP2B3Q16720 1220 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 RILPL2Q969X0 211 aa17.42■□□□□ 0.38
USP39-220ENST00000613444 BSDC1Q9NW68 430 aaPredicted RBP17.42■□□□□ 0.38
USP39-220ENST00000613444 KLRG2A4D1S0 409 aaPredicted RBP17.41■□□□□ 0.38
USP39-220ENST00000613444 MMP10P09238 476 aa17.41■□□□□ 0.38
USP39-220ENST00000613444 HELBQ8NG08 1087 aaPredicted RBP17.41■□□□□ 0.38
USP39-220ENST00000613444 XAGE2Q96GT9 111 aa17.41■□□□□ 0.38
USP39-220ENST00000613444 BOLA2Q9H3K6 86 aa17.41■□□□□ 0.38
USP39-220ENST00000613444 RPS8P62241 208 aaKnown RBP17.4■□□□□ 0.38
USP39-220ENST00000613444 MSL1Q68DK7 614 aa17.4■□□□□ 0.38
USP39-220ENST00000613444 CHRNDQ07001 517 aa17.4■□□□□ 0.38
USP39-220ENST00000613444 PDGFDQ9GZP0 370 aaPredicted RBP17.4■□□□□ 0.38
USP39-220ENST00000613444 TAF5LO75529 589 aa17.39■□□□□ 0.37
USP39-220ENST00000613444 CHMLP26374 656 aa17.39■□□□□ 0.37
USP39-220ENST00000613444 PUM3Q15397 648 aaKnown RBP17.39■□□□□ 0.37
USP39-220ENST00000613444 CNTROBQ8N137 903 aa17.39■□□□□ 0.37
USP39-220ENST00000613444 MINPP1Q9UNW1 487 aa17.39■□□□□ 0.37
USP39-220ENST00000613444 DDX46Q7L014 1031 aaKnown RBP17.39■□□□□ 0.37
USP39-220ENST00000613444 HAUS7Q99871 368 aa17.39■□□□□ 0.37
USP39-220ENST00000613444 SNAP23O00161 211 aa17.38■□□□□ 0.37
USP39-220ENST00000613444 MFAP1P55081 439 aaKnown RBP17.38■□□□□ 0.37
USP39-220ENST00000613444 EVI5LQ96CN4 794 aa17.38■□□□□ 0.37
USP39-220ENST00000613444 COL11A2P13942 1736 aaPredicted RBP17.38■□□□□ 0.37
USP39-220ENST00000613444 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.38■□□□□ 0.37
USP39-220ENST00000613444 LPIN2Q92539 896 aa17.38■□□□□ 0.37
USP39-220ENST00000613444 HOXA10P31260 410 aaPredicted RBP17.37■□□□□ 0.37
USP39-220ENST00000613444 GRAPQ13588 217 aa17.37■□□□□ 0.37
USP39-220ENST00000613444 GRAPLQ8TC17 118 aaPredicted RBP17.37■□□□□ 0.37
USP39-220ENST00000613444 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
USP39-220ENST00000613444 NDUFB9Q9Y6M9 179 aa17.37■□□□□ 0.37
USP39-220ENST00000613444 EDC3Q96F86 508 aaKnown RBP17.36■□□□□ 0.37
USP39-220ENST00000613444 TBC1D32Q96NH3 1257 aa17.36■□□□□ 0.37
USP39-220ENST00000613444 PARP3Q9Y6F1 533 aa17.36■□□□□ 0.37
USP39-220ENST00000613444 CASC1Q6TDU7 716 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 ZNF512BQ96KM6 892 aaPredicted RBP17.35■□□□□ 0.37
USP39-220ENST00000613444 WTIPA6NIX2 430 aaPredicted RBP17.35■□□□□ 0.37
USP39-220ENST00000613444 SCARF1Q14162 830 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 CCDC158Q5M9N0 1113 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 SLC51AQ86UW1 340 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 RPGRQ92834 1020 aaKnown RBP17.35■□□□□ 0.37
USP39-220ENST00000613444 ESYT1Q9BSJ8 1104 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 IL25Q9H293 177 aa17.35■□□□□ 0.37
USP39-220ENST00000613444 SLC5A1P13866 664 aa17.34■□□□□ 0.37
USP39-220ENST00000613444 MYO5AQ9Y4I1 1855 aaKnown RBP17.34■□□□□ 0.37
USP39-220ENST00000613444 LRRC37AA6NMS7 1700 aa17.34■□□□□ 0.37
USP39-220ENST00000613444 IFIT1P09914 478 aaKnown RBP17.33■□□□□ 0.37
USP39-220ENST00000613444 TTC39AQ5SRH9 613 aa17.33■□□□□ 0.37
USP39-220ENST00000613444 GORABQ5T7V8 394 aa17.33■□□□□ 0.37
USP39-220ENST00000613444 CCDC102BQ68D86 513 aa17.33■□□□□ 0.37
USP39-220ENST00000613444 UPF1Q92900 1129 aaKnown RBP eCLIP17.33■□□□□ 0.37
USP39-220ENST00000613444 UPF2Q9HAU5 1272 aaKnown RBP17.33■□□□□ 0.37
USP39-220ENST00000613444 PHKA1P46020 1223 aa17.33■□□□□ 0.36
USP39-220ENST00000613444 UBE4AQ14139 1066 aa17.33■□□□□ 0.36
USP39-220ENST00000613444 CRAMP1Q96RY5 1269 aa17.33■□□□□ 0.36
USP39-220ENST00000613444 DNAJC2Q99543 621 aaKnown RBP17.33■□□□□ 0.36
USP39-220ENST00000613444 MYH7P12883 1935 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 SRGNP10124 158 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 ARID4AP29374 1257 aaPredicted RBP17.32■□□□□ 0.36
USP39-220ENST00000613444 RBM17Q96I25 401 aaKnown RBP17.32■□□□□ 0.36
USP39-220ENST00000613444 C22orf23Q9BZE7 217 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 LTBP1Q14766 1721 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 MCAMP43121 646 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 PAG1Q9NWQ8 432 aa17.32■□□□□ 0.36
USP39-220ENST00000613444 RFX7Q2KHR2 1363 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 RBM25P49756 843 aaKnown RBP17.31■□□□□ 0.36
USP39-220ENST00000613444 SLC16A10Q8TF71 515 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 USP26Q9BXU7 913 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 ANKRD2Q9GZV1 360 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 CACNA1SQ13698 1873 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 IRS2Q9Y4H2 1338 aa17.31■□□□□ 0.36
USP39-220ENST00000613444 GOLIM4O00461 696 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 SGSM2O43147 1006 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 EIF5BO60841 1220 aaKnown RBP17.3■□□□□ 0.36
USP39-220ENST00000613444 PI16Q6UXB8 463 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 KBTBD3Q8NAB2 608 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 FSD1Q9BTV5 496 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms