RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TRIM17Q9Y577 477 aa18.23■□□□□ 0.51
SHKBP1-218ENST00000598907 SLC10A5Q5PT55 438 aa18.22■□□□□ 0.51
SHKBP1-218ENST00000598907 NSFL1CQ9UNZ2 370 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-218ENST00000598907 HTTP42858 3142 aa18.22■□□□□ 0.51
SHKBP1-218ENST00000598907 EN2P19622 333 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 SCARF1Q14162 830 aa18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 TAF7Q15545 349 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 NOM1Q5C9Z4 860 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 PRAMEF18Q5VWM3 479 aa18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 THUMPD2Q9BTF0 503 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-218ENST00000598907 SCN9AQ15858 1988 aa18.21■□□□□ 0.5
SHKBP1-218ENST00000598907 TM4SF4P48230 202 aa18.19■□□□□ 0.5
SHKBP1-218ENST00000598907 SREBF2Q12772 1141 aa18.19■□□□□ 0.5
SHKBP1-218ENST00000598907 INTS3Q68E01 1043 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-218ENST00000598907 TRIOBPQ9H2D6 2365 aa18.19■□□□□ 0.5
SHKBP1-218ENST00000598907 COL4A1P02462 1669 aa18.18■□□□□ 0.5
SHKBP1-218ENST00000598907 GPSM2P81274 684 aa18.18■□□□□ 0.5
SHKBP1-218ENST00000598907 OTOP1Q7RTM1 612 aa18.18■□□□□ 0.5
SHKBP1-218ENST00000598907 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-218ENST00000598907 POLLQ9UGP5 575 aa18.18■□□□□ 0.5
SHKBP1-218ENST00000598907 TMC4Q7Z404 712 aa18.17■□□□□ 0.5
SHKBP1-218ENST00000598907 SLC17A8Q8NDX2 589 aa18.17■□□□□ 0.5
SHKBP1-218ENST00000598907 CFAP53Q96M91 514 aa18.17■□□□□ 0.5
SHKBP1-218ENST00000598907 MRS2Q9HD23 443 aa18.17■□□□□ 0.5
SHKBP1-218ENST00000598907 TRMT112Q9UI30 125 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-218ENST00000598907 G3V3G9 751 aa18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 U2AF1L5P0DN76 240 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 U2AF1Q01081 240 aaKnown RBP eCLIP18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 DCAF8Q5TAQ9 597 aa18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 CELF1Q92879 486 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 EYA3Q99504 573 aa18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 SZT2Q5T011 3432 aa18.16■□□□□ 0.5
SHKBP1-218ENST00000598907 ANXA1P04083 346 aa18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 VIL1P09327 827 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 EIF4A1P60842 406 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 PRKG1Q13976 671 aa18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 NLRP10Q86W26 655 aa18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 PNISRQ8TF01 805 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 SH3TC1Q8TE82 1336 aa18.15■□□□□ 0.5
SHKBP1-218ENST00000598907 KIAA0100Q14667 2235 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-218ENST00000598907 H0YGN5 161 aa18.14■□□□□ 0.49
SHKBP1-218ENST00000598907 ZNF280AP59817 542 aaPredicted RBP18.14■□□□□ 0.49
SHKBP1-218ENST00000598907 CFHR5Q9BXR6 569 aa18.14■□□□□ 0.49
SHKBP1-218ENST00000598907 MYOZ2Q9NPC6 264 aa18.14■□□□□ 0.49
SHKBP1-218ENST00000598907 CENPFP49454 3210 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 TCIRG1Q13488 830 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 TBC1D16Q8TBP0 767 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 BRCA2P51587 3418 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 PITPNM2Q9BZ72 1349 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 ZNF609O15014 1411 aa18.13■□□□□ 0.49
SHKBP1-218ENST00000598907 HTATSF1O43719 755 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 PROSER3Q2NL68 480 aa18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 RSBN1LQ6PCB5 846 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 CHRDL2Q6WN34 429 aa18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 CD99L2Q8TCZ2 262 aa18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 PTPN22Q9Y2R2 807 aa18.12■□□□□ 0.49
SHKBP1-218ENST00000598907 CEP290O15078 2479 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 EIF2S2P20042 333 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 NF2P35240 595 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 PTPN12Q05209 780 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 AIMP1Q12904 312 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 TMEM106CQ9BVX2 250 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 ZC3H12CQ9C0D7 883 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 NUDCQ9Y266 331 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 ERBB4Q15303 1308 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 DLG5Q8TDM6 1919 aa18.11■□□□□ 0.49
SHKBP1-218ENST00000598907 UFL1O94874 794 aa18.1■□□□□ 0.49
SHKBP1-218ENST00000598907 USP17L8P0C7I0 530 aa18.1■□□□□ 0.49
SHKBP1-218ENST00000598907 HSP90AB3PQ58FF7 597 aa18.1■□□□□ 0.49
SHKBP1-218ENST00000598907 AGBL3Q8NEM8 1001 aa18.1■□□□□ 0.49
SHKBP1-218ENST00000598907 ARMC5Q96C12 935 aa18.1■□□□□ 0.49
SHKBP1-218ENST00000598907 PSME4Q14997 1843 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 ALDH1A1P00352 501 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 MYCP01106 439 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 NBPF9Q3BBW0 867 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 SPRYD7Q5W111 196 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 LRP10Q7Z4F1 713 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 ERO1AQ96HE7 468 aa18.09■□□□□ 0.49
SHKBP1-218ENST00000598907 PDIA6Q15084 440 aa18.08■□□□□ 0.48
SHKBP1-218ENST00000598907 OTUD5Q96G74 571 aa18.08■□□□□ 0.48
SHKBP1-218ENST00000598907 FZD1Q9UP38 647 aa18.08■□□□□ 0.48
SHKBP1-218ENST00000598907 RTL5Q5HYW3 569 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-218ENST00000598907 ARMC9Q7Z3E5 817 aa18.07■□□□□ 0.48
SHKBP1-218ENST00000598907 IFNL1Q8IU54 200 aa18.07■□□□□ 0.48
SHKBP1-218ENST00000598907 NECTIN2Q92692 538 aa18.07■□□□□ 0.48
SHKBP1-218ENST00000598907 EFCC1Q9HA90 598 aa18.07■□□□□ 0.48
SHKBP1-218ENST00000598907 IGF2BP3O00425 579 aaKnown RBP eCLIP18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 COPS6Q7L5N1 327 aa18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 XAGE3Q8WTP9 111 aa18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 ANKIB1Q9P2G1 1089 aa18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 RBM27Q9P2N5 1060 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 ANGEL1Q9UNK9 670 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 ADAMTS8Q9UP79 889 aa18.06■□□□□ 0.48
SHKBP1-218ENST00000598907 MANSC4A6NHS7 340 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 SASH1O94885 1247 aa18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 WDR43Q15061 677 aaKnown RBP eCLIP18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 SLC4A8Q2Y0W8 1093 aa18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 FAM89AQ96GI7 184 aa18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 ZNF333Q96JL9 665 aa18.05■□□□□ 0.48
SHKBP1-218ENST00000598907 GMLQ99445 158 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms