RNA–Protein interactions for RNA: ENST00000590208.5

MBD1-222, Transcript of methyl-CpG binding domain protein 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 2,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-222	ENST00000590208	XPO4	Q9C0E2	1151 aa	Known RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	KCND1	Q9NSA2	647 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	RCOR1	Q9UKL0	485 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	KIF2A	O00139	706 aa	Predicted RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	GUCY1B3	Q02153	619 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	MTX1	Q13505	466 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	FSIP1	Q8NA03	581 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	OSBPL5	Q9H0X9	879 aa	Predicted RBP	18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	NDUFB9	Q9Y6M9	179 aa		18.43	■□□□□ 0.54
MBD1-222	ENST00000590208	HIP1	O00291	1037 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	TAF5L	O75529	589 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	GSDMD	P57764	484 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	IFNK	Q9P0W0	207 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	FER1L4	A9Z1Z3	1794 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	SEC31A	O94979	1220 aa	Known RBP	18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	EIF4A1	P60842	406 aa	Known RBP	18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	KLHDC4	Q8TBB5	520 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	NEK1	Q96PY6	1258 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	LGR6	Q9HBX8	967 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	MED23	Q9ULK4	1368 aa		18.42	■□□□□ 0.54
MBD1-222	ENST00000590208	LRRC37A3	O60309	1634 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	ME1	P48163	572 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	HOMER1	Q86YM7	354 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	SEC62	Q99442	399 aa	Known RBP	18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	EPC1	Q9H2F5	836 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	SNRK	Q9NRH2	765 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	FAM160A1	Q05DH4	1040 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	DPCR1	Q3MIW9	517 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	CCDC129	Q6ZRS4	1044 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	DNAI1	Q9UI46	699 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	COL15A1	P39059	1388 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	NALCN	Q8IZF0	1738 aa		18.41	■□□□□ 0.54
MBD1-222	ENST00000590208	KDM4F	A0A1W2PPD8	638 aa		18.4	■□□□□ 0.54
MBD1-222	ENST00000590208	ERC1	Q8IUD2	1116 aa		18.4	■□□□□ 0.54
MBD1-222	ENST00000590208	ZCCHC17	Q9NP64	241 aa	Known RBP	18.4	■□□□□ 0.54
MBD1-222	ENST00000590208	MAP3K2	Q9Y2U5	619 aa		18.4	■□□□□ 0.54
MBD1-222	ENST00000590208	DNAJC2	Q99543	621 aa	Known RBP	18.4	■□□□□ 0.54
MBD1-222	ENST00000590208	SDF4	Q9BRK5	362 aa		18.4	■□□□□ 0.54
MBD1-222	ENST00000590208		A0A1B0GVL5	298 aa		18.39	■□□□□ 0.54
MBD1-222	ENST00000590208	FANCG	O15287	622 aa		18.39	■□□□□ 0.54
MBD1-222	ENST00000590208	ZRANB2	O95218	330 aa	Known RBP eCLIP	18.39	■□□□□ 0.54
MBD1-222	ENST00000590208	SFPQ	P23246	707 aa	Known RBP eCLIP	18.39	■□□□□ 0.54
MBD1-222	ENST00000590208	FMN2	Q9NZ56	1722 aa		18.39	■□□□□ 0.54
MBD1-222	ENST00000590208	BIN1	O00499	593 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	SIRT1	Q96EB6	747 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	TRIM34	Q9BYJ4	488 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	HMG20B	Q9P0W2	317 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	CCT2	P78371	535 aa	Known RBP	18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	ST5	P78524	1137 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	G3BP1	Q13283	466 aa	Known RBP eCLIP	18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	PROSER3	Q2NL68	480 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	TSGA10IP	Q3SY00	556 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	UBXN4	Q92575	508 aa		18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	ORC3	Q9UBD5	711 aa	Predicted RBP	18.39	■□□□□ 0.53
MBD1-222	ENST00000590208	RAD51AP2	Q09MP3	1159 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	TMCO3	Q6UWJ1	677 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	KAZALD1	Q96I82	304 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	CTDNEP1	O95476	244 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	NSUN7	Q8NE18	718 aa	Known RBP	18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	IPO4	Q8TEX9	1081 aa	Known RBP	18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	SUCLG2	Q96I99	432 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	NAT10	Q9H0A0	1025 aa	Known RBP	18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	IMPACT	Q9P2X3	320 aa		18.38	■□□□□ 0.53
MBD1-222	ENST00000590208	PSD	A5PKW4	1024 aa	Predicted RBP	18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	CYP21A2	P08686	494 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	FAM193A	P78312	1265 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	SMARCC2	Q8TAQ2	1214 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	NCOA5	Q9HCD5	579 aa	Known RBP	18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	PTPN21	Q16825	1174 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	ILDR1	Q86SU0	546 aa	Predicted RBP	18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	BICC1	Q9H694	974 aa	Known RBP	18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	BABAM1	Q9NWV8	329 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	PCDHA7	Q9UN72	937 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	TECPR2	O15040	1411 aa		18.37	■□□□□ 0.53
MBD1-222	ENST00000590208	HOXC9	P31274	260 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	ETF1	P62495	437 aa	Known RBP	18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	CREBRF	Q8IUR6	639 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	PTPDC1	A2A3K4	754 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	NLRP6	P59044	892 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	ISM2	Q6H9L7	571 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	FMR1NB	Q8N0W7	255 aa	Predicted RBP	18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	FEZ2	Q9UHY8	353 aa	Predicted RBP	18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	SASH3	O75995	380 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	URI1	O94763	535 aa	Predicted RBP	18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	NDUFA8	P51970	172 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	APOBR	Q0VD83	1088 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	USPL1	Q5W0Q7	1092 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	CCDC150	Q8NCX0	1101 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	NGDN	Q8NEJ9	315 aa	Known RBP	18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	SMARCE1	Q969G3	411 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	CARD6	Q9BX69	1037 aa		18.36	■□□□□ 0.53
MBD1-222	ENST00000590208	SLC20A2	Q08357	652 aa		18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	GOLGA8F	Q08AF8	430 aa		18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	GOLGA8DP	Q0D2H9	430 aa		18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	STOX1	Q6ZVD7	989 aa		18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	LMOD1	P29536	600 aa	Predicted RBP	18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	KRT32	Q14532	448 aa		18.35	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms