RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ERVH48-1M5A8F1 160 aa11.5□□□□□ -0.57
SMAD4-209ENST00000589941 SMCPP49901 116 aaPredicted RBP11.5□□□□□ -0.57
SMAD4-209ENST00000589941 CRIPAKQ8N1N5 446 aa11.5□□□□□ -0.57
SMAD4-209ENST00000589941 KLRG1Q96E93 195 aa11.5□□□□□ -0.57
SMAD4-209ENST00000589941 USP6P35125 1406 aa11.5□□□□□ -0.57
SMAD4-209ENST00000589941 AXIN1O15169 862 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 ZIC2O95409 532 aaPredicted RBP11.49□□□□□ -0.57
SMAD4-209ENST00000589941 KCNQ4P56696 695 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 SEMA3FQ13275 785 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 CTC1Q2NKJ3 1217 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 TOM1L2Q6ZVM7 507 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 ZMYND15Q9H091 742 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 TRAK1Q9UPV9 953 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 LTN1O94822 1766 aa11.49□□□□□ -0.57
SMAD4-209ENST00000589941 CAPN5O15484 640 aaPredicted RBP11.48□□□□□ -0.57
SMAD4-209ENST00000589941 TRAK2O60296 914 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 GCP02774 474 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 EMILIN1Q9Y6C2 1016 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 ACEP12821 1306 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 WDR17Q8IZU2 1322 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 CPSF1Q10570 1443 aaKnown RBP11.48□□□□□ -0.57
SMAD4-209ENST00000589941 KIAA1210Q9ULL0 1709 aa11.48□□□□□ -0.57
SMAD4-209ENST00000589941 BRCA1P38398 1863 aaKnown RBP11.48□□□□□ -0.57
SMAD4-209ENST00000589941 PPIP5K1Q6PFW1 1433 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 SOX11P35716 441 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 MSL1Q68DK7 614 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 PHTF2Q8N3S3 785 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 ABTB2Q8N961 1025 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 SLC16A10Q8TF71 515 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 ZNF592Q92610 1267 aa11.47□□□□□ -0.57
SMAD4-209ENST00000589941 NUDT16Q96DE0 195 aaKnown RBP11.47□□□□□ -0.57
SMAD4-209ENST00000589941 TNRC6CQ9HCJ0 1690 aaKnown RBP11.46□□□□□ -0.57
SMAD4-209ENST00000589941 NFAT5O94916 1531 aa11.46□□□□□ -0.57
SMAD4-209ENST00000589941 DHX9Q08211 1270 aaKnown RBP11.46□□□□□ -0.57
SMAD4-209ENST00000589941 TSGA10IPQ3SY00 556 aa11.46□□□□□ -0.57
SMAD4-209ENST00000589941 CCDC85AQ96PX6 553 aaPredicted RBP11.46□□□□□ -0.57
SMAD4-209ENST00000589941 KIF13BQ9NQT8 1826 aa11.46□□□□□ -0.58
SMAD4-209ENST00000589941 UBR3Q6ZT12 1888 aa11.45□□□□□ -0.58
SMAD4-209ENST00000589941 PIK3CDO00329 1044 aa11.45□□□□□ -0.58
SMAD4-209ENST00000589941 HDGFL1Q5TGJ6 251 aa11.45□□□□□ -0.58
SMAD4-209ENST00000589941 NMRK2Q9NPI5 230 aa11.45□□□□□ -0.58
SMAD4-209ENST00000589941 TOMM70O94826 608 aa11.44□□□□□ -0.58
SMAD4-209ENST00000589941 CBLBQ13191 982 aa11.44□□□□□ -0.58
SMAD4-209ENST00000589941 LILRA1O75019 489 aa11.43□□□□□ -0.58
SMAD4-209ENST00000589941 BMP1P13497 986 aa11.43□□□□□ -0.58
SMAD4-209ENST00000589941 RNF20Q5VTR2 975 aa11.43□□□□□ -0.58
SMAD4-209ENST00000589941 CDCA7Q9BWT1 371 aaPredicted RBP11.43□□□□□ -0.58
SMAD4-209ENST00000589941 PGPEP1Q9NXJ5 209 aa11.43□□□□□ -0.58
SMAD4-209ENST00000589941 PCDHB11Q9Y5F2 797 aa11.43□□□□□ -0.58
SMAD4-209ENST00000589941 HSPA1AP0DMV8 641 aaKnown RBP11.42□□□□□ -0.58
SMAD4-209ENST00000589941 HSPA1BP0DMV9 641 aaKnown RBP11.42□□□□□ -0.58
SMAD4-209ENST00000589941 SLFNL1Q499Z3 407 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 TRIM46Q7Z4K8 759 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 RNF135Q8IUD6 432 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 GLMNQ92990 594 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 CYLDQ9NQC7 956 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 TFCP2L1Q9NZI6 479 aa11.42□□□□□ -0.58
SMAD4-209ENST00000589941 RGPD2P0DJD1 1756 aa11.41□□□□□ -0.58
SMAD4-209ENST00000589941 IGSF1Q8N6C5 1336 aa11.41□□□□□ -0.58
SMAD4-209ENST00000589941 ADD1P35611 737 aaKnown RBP11.41□□□□□ -0.58
SMAD4-209ENST00000589941 UCN2Q96RP3 112 aa11.41□□□□□ -0.58
SMAD4-209ENST00000589941 ARFGEF1Q9Y6D6 1849 aa11.41□□□□□ -0.58
SMAD4-209ENST00000589941 NSD2O96028 1365 aa11.41□□□□□ -0.58
SMAD4-209ENST00000589941 TNRC18O15417 2968 aaPredicted RBP11.4□□□□□ -0.58
SMAD4-209ENST00000589941 SCTRP47872 440 aa11.4□□□□□ -0.58
SMAD4-209ENST00000589941 COL23A1Q86Y22 540 aaPredicted RBP11.4□□□□□ -0.58
SMAD4-209ENST00000589941 CARD10Q9BWT7 1032 aa11.4□□□□□ -0.58
SMAD4-209ENST00000589941 ATP13A2Q9NQ11 1180 aa11.4□□□□□ -0.58
SMAD4-209ENST00000589941 EXOC5O00471 708 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 SBF1O95248 1867 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 C4BP0C0L5 1744 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 Q6ZVU0 165 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 NLRP13Q86W25 1043 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 MEIOBQ8N635 442 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 KCPQ6ZWJ8 1503 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 CCDC7Q96M83 1385 aa11.39□□□□□ -0.59
SMAD4-209ENST00000589941 POTECB2RU33 542 aa11.38□□□□□ -0.59
SMAD4-209ENST00000589941 CDK19Q9BWU1 502 aa11.38□□□□□ -0.59
SMAD4-209ENST00000589941 CD2APQ9Y5K6 639 aa11.38□□□□□ -0.59
SMAD4-209ENST00000589941 FAM208AQ9UK61 1670 aaKnown RBP11.38□□□□□ -0.59
SMAD4-209ENST00000589941 ERVK-9P63128 1117 aa11.37□□□□□ -0.59
SMAD4-209ENST00000589941 MRPL14Q6P1L8 145 aaKnown RBP11.37□□□□□ -0.59
SMAD4-209ENST00000589941 PPARGC1BQ86YN6 1023 aaKnown RBP11.37□□□□□ -0.59
SMAD4-209ENST00000589941 PLPP7Q8NBV4 271 aa11.37□□□□□ -0.59
SMAD4-209ENST00000589941 AGBL1Q96MI9 1066 aa11.37□□□□□ -0.59
SMAD4-209ENST00000589941 GMPR2Q9P2T1 348 aaKnown RBP11.37□□□□□ -0.59
SMAD4-209ENST00000589941 CSB-PGBD3P0DP91 1061 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 SLC27A3Q5K4L6 730 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 CC2D2BQ6DHV5 1058 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 KDF1Q8NAX2 398 aaPredicted RBP11.36□□□□□ -0.59
SMAD4-209ENST00000589941 CALR3Q96L12 384 aaKnown RBP11.36□□□□□ -0.59
SMAD4-209ENST00000589941 PCGF6Q9BYE7 350 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 TIMELESSQ9UNS1 1208 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 DOLKQ9UPQ8 538 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 PXDNLA1KZ92 1463 aa11.36□□□□□ -0.59
SMAD4-209ENST00000589941 MON2Q7Z3U7 1717 aa11.35□□□□□ -0.59
SMAD4-209ENST00000589941 TIAM2Q8IVF5 1701 aa11.35□□□□□ -0.59
SMAD4-209ENST00000589941 SKIP12755 728 aa11.35□□□□□ -0.59
SMAD4-209ENST00000589941 TBC1D9Q6ZT07 1266 aa11.35□□□□□ -0.59
SMAD4-209ENST00000589941 OXLD1Q5BKU9 147 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms