RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 SAP130Q9H0E3 1048 aa8.1□□□□□ -1.11
SMCHD1-206ENST00000581631 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.1□□□□□ -1.112e-9■■■■■ 223.6
SMCHD1-206ENST00000581631 TRIM33Q9UPN9 1127 aa8.1□□□□□ -1.11
SMCHD1-206ENST00000581631 FAM69CQ0P6D2 419 aa8.09□□□□□ -1.11
SMCHD1-206ENST00000581631 GDF6Q6KF10 455 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-206ENST00000581631 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.09□□□□□ -1.11
SMCHD1-206ENST00000581631 TNFRSF10BO14763 440 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 GHRHP01286 108 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 CD97P48960 835 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 SWI5Q1ZZU3 235 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 COL13A1Q5TAT6 717 aaPredicted RBP8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 ADAMTSL4Q6UY14 1074 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 NLRP13Q86W25 1043 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 GALNT11Q8NCW6 608 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 ZMIZ1Q9ULJ6 1067 aa8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 NOVA2Q9UNW9 492 aaKnown RBP8.08□□□□□ -1.12
SMCHD1-206ENST00000581631 MCTP1Q6DN14 999 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 CACTIN-AS1Q8N1I8 211 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 AGGF1Q8N302 714 aaeCLIP8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 OR13H1Q8NG92 308 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 COL26A1Q96A83 441 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 PRIMPOLQ96LW4 560 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 KRTAP9-9Q9BYP9 154 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 KRTAP9-4Q9BYQ2 154 aa8.07□□□□□ -1.12
SMCHD1-206ENST00000581631 ACIN1Q9UKV3 1341 aaKnown RBP8.06□□□□□ -1.12
SMCHD1-206ENST00000581631 WISP1O95388 367 aa8.06□□□□□ -1.12
SMCHD1-206ENST00000581631 UBL7Q96S82 380 aaPredicted RBP8.06□□□□□ -1.12
SMCHD1-206ENST00000581631 ELOAQ14241 798 aaKnown RBP8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 TMEM132AQ24JP5 1023 aa8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 CDCA8Q53HL2 280 aa8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 C16orf46Q6P387 395 aa8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 ARMC10Q8N2F6 343 aa8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 DCAF11Q8TEB1 546 aa8.05□□□□□ -1.12
SMCHD1-206ENST00000581631 KIAA1324LA8MWY0 1029 aaPredicted RBP8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 MED26O95402 600 aa8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 BRD2P25440 801 aaKnown RBP8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 CAPN12Q6ZSI9 719 aa8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 MUC3BQ9H195 1237 aa8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 RBSNQ9H1K0 784 aa8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 RAXQ9Y2V3 346 aa8.04□□□□□ -1.12
SMCHD1-206ENST00000581631 COL17A1Q9UMD9 1497 aaPredicted RBP8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 PRMT3O60678 531 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 KIF4AO95239 1232 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 SSTR4P31391 388 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 SRPK2P78362 688 aaKnown RBP8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 ATP11AP98196 1134 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 PCMTD2Q9NV79 361 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 KCNK4Q9NYG8 393 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 PPME1Q9Y570 386 aa8.03□□□□□ -1.12
SMCHD1-206ENST00000581631 IGLV1-40P01703 118 aa8.02□□□□□ -1.13
SMCHD1-206ENST00000581631 GLB1P16278 677 aa8.02□□□□□ -1.13
SMCHD1-206ENST00000581631 STK32AQ8WU08 396 aa8.02□□□□□ -1.13
SMCHD1-206ENST00000581631 CXXC1Q9P0U4 656 aaPredicted RBP8.02□□□□□ -1.13
SMCHD1-206ENST00000581631 UBAP1LF5GYI3 381 aa8.01□□□□□ -1.13
SMCHD1-206ENST00000581631 LINC01387J3KSC0 135 aa8.01□□□□□ -1.13
SMCHD1-206ENST00000581631 RFX1P22670 979 aa8.01□□□□□ -1.13
SMCHD1-206ENST00000581631 GOLGA2P5Q9HBQ8 144 aa8.01□□□□□ -1.13
SMCHD1-206ENST00000581631 GSC2O15499 205 aa8□□□□□ -1.13
SMCHD1-206ENST00000581631 ZDHHC13Q8IUH4 622 aa8□□□□□ -1.13
SMCHD1-206ENST00000581631 FAM46AQ96IP4 442 aaKnown RBP8□□□□□ -1.13
SMCHD1-206ENST00000581631 TGFB1P01137 390 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 CD68P34810 354 aaPredicted RBP7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 HYAL2Q12891 473 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 TXNDC11Q6PKC3 985 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 KIAA1211Q6ZU35 1233 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 PIK3R5Q8WYR1 880 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 RASSF4Q9H2L5 321 aa7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 ZNF777Q9ULD5 760 aaPredicted RBP7.99□□□□□ -1.13
SMCHD1-206ENST00000581631 ADAM11O75078 769 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 CDC27P30260 824 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 ZAP70P43403 619 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 UVSSAQ2YD98 709 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 CEP135Q66GS9 1140 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 ACAD11Q709F0 780 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 CEP120Q8N960 986 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 FOXD4L4Q8WXT5 416 aaPredicted RBP7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 LACRTQ9GZZ8 138 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 FAM13BQ9NYF5 915 aa7.98□□□□□ -1.13
SMCHD1-206ENST00000581631 ZBTB39O15060 712 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 CYP2E1P05181 493 aaPredicted RBP7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 SPINK2P20155 84 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 EPHA1P21709 976 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 FMNL2Q96PY5 1086 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 ADAM19Q9H013 955 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 STOML1Q9UBI4 398 aa7.97□□□□□ -1.13
SMCHD1-206ENST00000581631 FSCN2O14926 492 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 DHX15O43143 795 aaKnown RBP7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 COBLO75128 1261 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 ADAMTS4O75173 837 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 SMNDC1O75940 238 aaKnown RBP eCLIP7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 KLHL23Q8NBE8 558 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 MKNK1Q9BUB5 465 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 PBX4Q9BYU1 374 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 CEP41Q9BYV8 373 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 C7orf69Q9H7B7 122 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 SLAIN2Q9P270 581 aa7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 OAS3Q9Y6K5 1087 aaKnown RBP7.96□□□□□ -1.14
SMCHD1-206ENST00000581631 PRR19A6NJB7 356 aa7.95□□□□□ -1.14
SMCHD1-206ENST00000581631 PTCD1O75127 700 aaKnown RBP7.95□□□□□ -1.14
SMCHD1-206ENST00000581631 NFIAQ12857 509 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms