RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	ZSCAN31	Q96LW9	406 aa	Predicted RBP	17.47	■□□□□ 0.39
PRPF8-216	ENST00000577001	CCAR1	Q8IX12	1150 aa	Known RBP	17.47	■□□□□ 0.39
PRPF8-216	ENST00000577001	USP28	Q96RU2	1077 aa		17.47	■□□□□ 0.39
PRPF8-216	ENST00000577001	SLC52A2	Q9HAB3	445 aa		17.47	■□□□□ 0.39
PRPF8-216	ENST00000577001	SH2B1	Q9NRF2	756 aa	Predicted RBP	17.47	■□□□□ 0.39
PRPF8-216	ENST00000577001	MARCKS	P29966	332 aa	Predicted RBP	17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	GOLGA8F	Q08AF8	430 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	GOLGA8DP	Q0D2H9	430 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	TAF7L	Q5H9L4	462 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	ZNF710	Q8N1W2	664 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	PIBF1	Q8WXW3	757 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	MYL10	Q9BUA6	226 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	METTL22	Q9BUU2	404 aa	Predicted RBP	17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	PTPDC1	A2A3K4	754 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	USP27X	A6NNY8	438 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	BECN2	A8MW95	431 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	TOM1L2	Q6ZVM7	507 aa		17.46	■□□□□ 0.39
PRPF8-216	ENST00000577001	PIK3C2A	O00443	1686 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	SF3A1	Q15459	793 aa	Known RBP	17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	SPECC1	Q5M775	1068 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	SDF4	Q9BRK5	362 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	GOLPH3L	Q9H4A5	285 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	BCL2L12	Q9HB09	334 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	TOMM22	Q9NS69	142 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	AKAP12	Q02952	1782 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	AOX1	Q06278	1338 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	IFIT1	P09914	478 aa	Known RBP	17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	TPD52L1	Q16890	204 aa	Predicted RBP	17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	CLIP2	Q9UDT6	1046 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	SCARF1	Q14162	830 aa		17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	FAM177A1	Q8N128	213 aa	Predicted RBP	17.45	■□□□□ 0.38
PRPF8-216	ENST00000577001	PHKG2	P15735	406 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NKX2-3	Q8TAU0	364 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	FUCA2	Q9BTY2	467 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NPHP3	Q7Z494	1330 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NBPF26	B4DH59	902 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	GOLGA6L19	H0YKK7	550 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	ATP2B3	Q16720	1220 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	HS1BP3	Q53T59	392 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NBPF14	Q5TI25	921 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NBPF10	Q6P3W6	841 aa	Known RBP	17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	NBPF15	Q8N660	670 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	FAM200A	Q8TCP9	573 aa		17.44	■□□□□ 0.38
PRPF8-216	ENST00000577001	CMTR1	Q8N1G2	835 aa	Known RBP	17.43	■□□□□ 0.38
PRPF8-216	ENST00000577001	CACTIN	Q8WUQ7	758 aa	Known RBP	17.43	■□□□□ 0.38
PRPF8-216	ENST00000577001	MCMDC2	Q4G0Z9	681 aa		17.43	■□□□□ 0.38
PRPF8-216	ENST00000577001	FSIP1	Q8NA03	581 aa		17.43	■□□□□ 0.38
PRPF8-216	ENST00000577001		M0R2C6	588 aa		17.43	■□□□□ 0.38
PRPF8-216	ENST00000577001	ZNF609	O15014	1411 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	SNRPA1	P09661	255 aa	Known RBP	17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	PAG1	Q9NWQ8	432 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	KIF3A	Q9Y496	699 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	AOPEP	Q8N6M6	819 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	ERBB3	P21860	1342 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001	NWD1	Q149M9	1564 aa		17.42	■□□□□ 0.38
PRPF8-216	ENST00000577001		A0A1B0GUL7	405 aa		17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	SLC4A8	Q2Y0W8	1093 aa		17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	GTF3C6	Q969F1	213 aa		17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	RRP12	Q5JTH9	1297 aa	Known RBP	17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	RGPD2	P0DJD1	1756 aa		17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	CTDNEP1	O95476	244 aa		17.41	■□□□□ 0.38
PRPF8-216	ENST00000577001	IDH1	O75874	414 aa	Known RBP	17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	TNNT1	P13805	278 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	ATF3	P18847	181 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	MTX1	Q13505	466 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	IFNL2	Q8IZJ0	200 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	KIAA1524	Q8TCG1	905 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	OSBP2	Q969R2	916 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	SMC2	O95347	1197 aa		17.4	■□□□□ 0.38
PRPF8-216	ENST00000577001	PDC	P20941	246 aa		17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	CHAF1A	Q13111	956 aa	Predicted RBP	17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	MYRIP	Q8NFW9	859 aa		17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	PHKB	Q93100	1093 aa		17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	ZKSCAN3	Q9BRR0	538 aa		17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	CLIC4	Q9Y696	253 aa		17.39	■□□□□ 0.38
PRPF8-216	ENST00000577001	SLIT1	O75093	1534 aa		17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001		E7EWF7	191 aa		17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	SENP2	Q9HC62	589 aa		17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	HSPD1	P10809	573 aa	Known RBP	17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	RFX5	P48382	616 aa	Predicted RBP	17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	TMEM87A	Q8NBN3	555 aa		17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	PRDM11	Q9NQV5	511 aa		17.39	■□□□□ 0.37
PRPF8-216	ENST00000577001	ARHGAP23	Q9P227	1491 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	DYNC1I1	O14576	645 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	ZAP70	P43403	619 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	REST	Q13127	1097 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	CCDC73	Q6ZRK6	1079 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	NSUN7	Q8NE18	718 aa	Known RBP	17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	TM6SF1	Q9BZW5	370 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	SCAND2P	Q9GZW5	306 aa	Predicted RBP	17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	KLF18	A0A0U1RQI7	1052 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	hCG_1642624	A0A1W2PR95	340 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	CPLX1	O14810	134 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	TTC39A	Q5SRH9	613 aa		17.38	■□□□□ 0.37
PRPF8-216	ENST00000577001	NPHP4	O75161	1426 aa	Predicted RBP	17.37	■□□□□ 0.37
PRPF8-216	ENST00000577001	XRN1	Q8IZH2	1706 aa	Known RBP	17.37	■□□□□ 0.37
PRPF8-216	ENST00000577001	KIN	O60870	393 aa	Known RBP	17.37	■□□□□ 0.37
PRPF8-216	ENST00000577001	LETM1	O95202	739 aa	Predicted RBP	17.37	■□□□□ 0.37
PRPF8-216	ENST00000577001	ADD1	P35611	737 aa	Known RBP	17.37	■□□□□ 0.37

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms