RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 RAPGEF4Q8WZA2 1011 aa18.41■□□□□ 0.54
NUP88-207ENST00000573584 CLIP2Q9UDT6 1046 aa18.41■□□□□ 0.54
NUP88-207ENST00000573584 PDCL2Q8N4E4 241 aa18.4■□□□□ 0.54
NUP88-207ENST00000573584 SMARCC2Q8TAQ2 1214 aa18.4■□□□□ 0.54
NUP88-207ENST00000573584 C16orf45Q96MC5 204 aaPredicted RBP18.4■□□□□ 0.54
NUP88-207ENST00000573584 PRDM10Q9NQV6 1147 aa18.4■□□□□ 0.54
NUP88-207ENST00000573584 USP16Q9Y5T5 823 aa18.4■□□□□ 0.54
NUP88-207ENST00000573584 CTIFO43310 598 aaKnown RBP18.4■□□□□ 0.54
NUP88-207ENST00000573584 RABL6Q3YEC7 729 aaPredicted RBP18.4■□□□□ 0.54
NUP88-207ENST00000573584 LLPHQ9BRT6 129 aaKnown RBP18.4■□□□□ 0.54
NUP88-207ENST00000573584 CCDC9Q9Y3X0 531 aaKnown RBP18.4■□□□□ 0.54
NUP88-207ENST00000573584 RFX7Q2KHR2 1363 aa18.4■□□□□ 0.54
NUP88-207ENST00000573584 PFKFB2O60825 505 aa18.39■□□□□ 0.54
NUP88-207ENST00000573584 PRDM4Q9UKN5 801 aa18.39■□□□□ 0.54
NUP88-207ENST00000573584 ATP5J2-PTCD1G3V325 749 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 GOLGA6L19H0YKK7 550 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 PTCD1O75127 700 aaKnown RBP18.39■□□□□ 0.53
NUP88-207ENST00000573584 HMGB1P09429 215 aaKnown RBP18.39■□□□□ 0.53
NUP88-207ENST00000573584 STOX1Q6ZVD7 989 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 DHX32Q7L7V1 743 aaKnown RBP18.39■□□□□ 0.53
NUP88-207ENST00000573584 SIPA1L3O60292 1781 aaPredicted RBP18.39■□□□□ 0.53
NUP88-207ENST00000573584 ERBB3P21860 1342 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 A0A087WZG4 1122 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 ADD1P35611 737 aaKnown RBP18.39■□□□□ 0.53
NUP88-207ENST00000573584 FOSBP53539 338 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 LRP10Q7Z4F1 713 aa18.39■□□□□ 0.53
NUP88-207ENST00000573584 SLIT3O75094 1523 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 ZC3H6P61129 1189 aaKnown RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 CBX1P83916 185 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 CCAR1Q8IX12 1150 aaKnown RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 KBTBD3Q8NAB2 608 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 NSUN7Q8NE18 718 aaKnown RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 CACTINQ8WUQ7 758 aaKnown RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 NLRP2Q9NX02 1062 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 SNRPA1P09661 255 aaKnown RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 NAA16Q6N069 864 aaPredicted RBP18.38■□□□□ 0.53
NUP88-207ENST00000573584 ANKRD7Q92527 254 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 RCOR1Q9UKL0 485 aa18.38■□□□□ 0.53
NUP88-207ENST00000573584 PHKG2P15735 406 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 IQCB1Q15051 598 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 CCDC144BQ3MJ40 725 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 CCDC144CPQ8IYA2 1237 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 TTC5Q8N0Z6 440 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 FTOQ9C0B1 505 aaKnown RBP eCLIP18.37■□□□□ 0.53
NUP88-207ENST00000573584 KDM6AO15550 1401 aaPredicted RBP18.37■□□□□ 0.53
NUP88-207ENST00000573584 CTAGE5O15320 804 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 TNNT1P13805 278 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 APOBRQ0VD83 1088 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 ATP2B3Q16720 1220 aa18.37■□□□□ 0.53
NUP88-207ENST00000573584 PTPDC1A2A3K4 754 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 CTDNEP1O95476 244 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 CDC25BP30305 580 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 LMBR1LQ6UX01 489 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 C11orf57Q6ZUT1 292 aaPredicted RBP18.36■□□□□ 0.53
NUP88-207ENST00000573584 NEUROD6Q96NK8 337 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 SH3TC1Q8TE82 1336 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 GOLIM4O00461 696 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 TATP17735 454 aaPredicted RBP18.36■□□□□ 0.53
NUP88-207ENST00000573584 CCT2P78371 535 aaKnown RBP18.36■□□□□ 0.53
NUP88-207ENST00000573584 STX1AQ16623 288 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 SLFNL1Q499Z3 407 aa18.36■□□□□ 0.53
NUP88-207ENST00000573584 LMTK3Q96Q04 1460 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.35■□□□□ 0.53
NUP88-207ENST00000573584 TPD52L1Q16890 204 aaPredicted RBP18.35■□□□□ 0.53
NUP88-207ENST00000573584 SARM1Q6SZW1 724 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 CCDC73Q6ZRK6 1079 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 NAP1L2Q9ULW6 460 aaPredicted RBP18.35■□□□□ 0.53
NUP88-207ENST00000573584 SMTNL1A8MU46 457 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 USP28Q96RU2 1077 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 GOLPH3LQ9H4A5 285 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 ADAMTS7Q9UKP4 1686 aa18.35■□□□□ 0.53
NUP88-207ENST00000573584 BECN2A8MW95 431 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 HELLSQ9NRZ9 838 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 C5P01031 1676 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 KINO60870 393 aaKnown RBP18.34■□□□□ 0.53
NUP88-207ENST00000573584 PPFIA3O75145 1194 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 EXOSC10Q01780 885 aaKnown RBP18.34■□□□□ 0.53
NUP88-207ENST00000573584 SNW1Q13573 536 aaKnown RBP18.34■□□□□ 0.53
NUP88-207ENST00000573584 IFNL2Q8IZJ0 200 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 ZNF396Q96N95 335 aaPredicted RBP18.34■□□□□ 0.53
NUP88-207ENST00000573584 NCOA5Q9HCD5 579 aaKnown RBP18.34■□□□□ 0.53
NUP88-207ENST00000573584 PAG1Q9NWQ8 432 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 PAXBP1Q9Y5B6 917 aa18.34■□□□□ 0.53
NUP88-207ENST00000573584 LRRC8AQ8IWT6 810 aa18.33■□□□□ 0.53
NUP88-207ENST00000573584 MRFAP1L1Q96HT8 127 aa18.33■□□□□ 0.53
NUP88-207ENST00000573584 FMNL2Q96PY5 1086 aa18.33■□□□□ 0.53
NUP88-207ENST00000573584 DSCC1Q9BVC3 393 aa18.33■□□□□ 0.53
NUP88-207ENST00000573584 ZSCAN20P17040 1043 aaPredicted RBP18.33■□□□□ 0.52
NUP88-207ENST00000573584 CASP7P55210 303 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 CAMTA1Q9Y6Y1 1673 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 SPDYE4A6NLX3 237 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 ME1P48163 572 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 TIMM10P62072 90 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 ATL3Q6DD88 541 aa18.33■□□□□ 0.52
NUP88-207ENST00000573584 GUCY1B3Q02153 619 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 FAM160A1Q05DH4 1040 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 AGXT2Q9BYV1 514 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 E7EWF7 191 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 NCBP1Q09161 790 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms