RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 KIF24Q5T7B8 1368 aa12.8□□□□□ -0.36
CIITA-208ENST00000572665 ESPNB1AK53 854 aa12.79□□□□□ -0.36
CIITA-208ENST00000572665 RC3H1Q5TC82 1133 aaKnown RBP12.79□□□□□ -0.36
CIITA-208ENST00000572665 EHBP1Q8NDI1 1231 aa12.79□□□□□ -0.36
CIITA-208ENST00000572665 ZCRB1Q8TBF4 217 aaKnown RBP12.79□□□□□ -0.36
CIITA-208ENST00000572665 CLSPNQ9HAW4 1339 aa12.79□□□□□ -0.36
CIITA-208ENST00000572665 FYB1O15117 783 aa12.78□□□□□ -0.36
CIITA-208ENST00000572665 SLC19A1P41440 591 aa12.78□□□□□ -0.36
CIITA-208ENST00000572665 RAPGEF4Q8WZA2 1011 aa12.78□□□□□ -0.36
CIITA-208ENST00000572665 SYTL4Q96C24 671 aaPredicted RBP12.78□□□□□ -0.36
CIITA-208ENST00000572665 QSER1Q2KHR3 1735 aa12.78□□□□□ -0.36
CIITA-208ENST00000572665 RGPD2P0DJD1 1756 aa12.78□□□□□ -0.36
CIITA-208ENST00000572665 PAPPAQ13219 1627 aa12.77□□□□□ -0.36
CIITA-208ENST00000572665 MYOM1P52179 1685 aa12.77□□□□□ -0.36
CIITA-208ENST00000572665 DOT1LQ8TEK3 1739 aa12.77□□□□□ -0.36
CIITA-208ENST00000572665 DEPDC4Q8N2C3 294 aa12.77□□□□□ -0.37
CIITA-208ENST00000572665 RETREG2Q8NC44 543 aa12.77□□□□□ -0.37
CIITA-208ENST00000572665 SLC16A10Q8TF71 515 aa12.77□□□□□ -0.37
CIITA-208ENST00000572665 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.37
CIITA-208ENST00000572665 GGNBP2Q9H3C7 697 aa12.77□□□□□ -0.37
CIITA-208ENST00000572665 MAP4K5Q9Y4K4 846 aa12.77□□□□□ -0.37
CIITA-208ENST00000572665 TATP17735 454 aaPredicted RBP12.76□□□□□ -0.37
CIITA-208ENST00000572665 MAP7D1Q3KQU3 841 aa12.76□□□□□ -0.37
CIITA-208ENST00000572665 RNF20Q5VTR2 975 aa12.76□□□□□ -0.37
CIITA-208ENST00000572665 TRAF7Q6Q0C0 670 aa12.76□□□□□ -0.37
CIITA-208ENST00000572665 INSRP06213 1382 aa12.76□□□□□ -0.37
CIITA-208ENST00000572665 FLT4P35916 1363 aa12.76□□□□□ -0.37
CIITA-208ENST00000572665 LZTS3O60299 673 aaPredicted RBP12.75□□□□□ -0.37
CIITA-208ENST00000572665 POLD1P28340 1107 aa12.75□□□□□ -0.37
CIITA-208ENST00000572665 NCOA4Q13772 614 aa12.75□□□□□ -0.37
CIITA-208ENST00000572665 RRS1Q15050 365 aaKnown RBP12.75□□□□□ -0.37
CIITA-208ENST00000572665 TSGA10IPQ3SY00 556 aa12.75□□□□□ -0.37
CIITA-208ENST00000572665 KCTD15Q96SI1 283 aaPredicted RBP12.75□□□□□ -0.37
CIITA-208ENST00000572665 PDGFDQ9GZP0 370 aaPredicted RBP12.75□□□□□ -0.37
CIITA-208ENST00000572665 VRTNQ9H8Y1 702 aa12.75□□□□□ -0.37
CIITA-208ENST00000572665 LY75O60449 1722 aa12.74□□□□□ -0.37
CIITA-208ENST00000572665 PCDH11XQ9BZA7 1347 aa12.74□□□□□ -0.37
CIITA-208ENST00000572665 PCDH11YQ9BZA8 1340 aa12.74□□□□□ -0.37
CIITA-208ENST00000572665 DOLKQ9UPQ8 538 aa12.74□□□□□ -0.37
CIITA-208ENST00000572665 SHANK3Q9BYB0 1731 aa12.74□□□□□ -0.37
CIITA-208ENST00000572665 WNT7AO00755 349 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 ATG7O95352 703 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 NBPF6Q5VWK0 638 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 SPRYD7Q5W111 196 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 VASH1Q7L8A9 365 aaPredicted RBP12.73□□□□□ -0.37
CIITA-208ENST00000572665 NBPF4Q96M43 638 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 CDK15Q96Q40 435 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 SYT17Q9BSW7 474 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 FHDC1Q9C0D6 1143 aaPredicted RBP12.73□□□□□ -0.37
CIITA-208ENST00000572665 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
CIITA-208ENST00000572665 MEGF6O75095 1541 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 MAP3K5Q99683 1374 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 FBLN1P23142 703 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 EML3Q32P44 896 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 LRRC4BQ9NT99 713 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 CHD4Q14839 1912 aa12.72□□□□□ -0.37
CIITA-208ENST00000572665 NSD3Q9BZ95 1437 aa12.71□□□□□ -0.37
CIITA-208ENST00000572665 SIAH2O43255 324 aa12.71□□□□□ -0.37
CIITA-208ENST00000572665 PDIA4P13667 645 aaKnown RBP12.71□□□□□ -0.37
CIITA-208ENST00000572665 ZNF827Q17R98 1081 aa12.71□□□□□ -0.37
CIITA-208ENST00000572665 MPNDQ8N594 471 aa12.71□□□□□ -0.37
CIITA-208ENST00000572665 MKRN1Q9UHC7 482 aaKnown RBP12.71□□□□□ -0.37
CIITA-208ENST00000572665 CCNL1Q9UK58 526 aaPredicted RBP12.71□□□□□ -0.37
CIITA-208ENST00000572665 TLL2Q9Y6L7 1015 aa12.71□□□□□ -0.37
CIITA-208ENST00000572665 ARID5BQ14865 1188 aa12.7□□□□□ -0.38
CIITA-208ENST00000572665 HSP90AB2PQ58FF8 381 aa12.7□□□□□ -0.38
CIITA-208ENST00000572665 INTS6LQ5JSJ4 861 aaKnown RBP12.7□□□□□ -0.38
CIITA-208ENST00000572665 MAP2P11137 1827 aaKnown RBP12.69□□□□□ -0.38
CIITA-208ENST00000572665 OXLD1Q5BKU9 147 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 USHBP1Q8N6Y0 703 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 SMARCC1Q92922 1105 aaPredicted RBP12.69□□□□□ -0.38
CIITA-208ENST00000572665 MRGPRX2Q96LB1 330 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 SPG7Q9UQ90 795 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 PCDHB11Q9Y5F2 797 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 NSD2O96028 1365 aa12.69□□□□□ -0.38
CIITA-208ENST00000572665 COL24A1Q17RW2 1714 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 ANKRD26Q9UPS8 1709 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 PNPLA7Q6ZV29 1317 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 ATP5J2-PTCD1G3V325 749 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 PPM1GO15355 546 aaPredicted RBP12.68□□□□□ -0.38
CIITA-208ENST00000572665 RAB15P59190 212 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 ZNF697Q5TEC3 545 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 ZNF598Q86UK7 904 aaKnown RBP12.68□□□□□ -0.38
CIITA-208ENST00000572665 PCGF6Q9BYE7 350 aa12.68□□□□□ -0.38
CIITA-208ENST00000572665 C5P01031 1676 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 TUBGCP6Q96RT7 1819 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 WASHC2AQ641Q2 1341 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 FAM196BA6NMK8 535 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 TRAIPQ9BWF2 469 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 PRKD2Q9BZL6 878 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 PKD1L3Q7Z443 1732 aa12.67□□□□□ -0.38
CIITA-208ENST00000572665 FSHRP23945 695 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 GRM5P41594 1212 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 ELOAQ14241 798 aaKnown RBP12.66□□□□□ -0.38
CIITA-208ENST00000572665 GPR162Q16538 588 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 MPRIPQ6WCQ1 1025 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 POLR3GLQ9BT43 218 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 NOD1Q9Y239 953 aa12.66□□□□□ -0.38
CIITA-208ENST00000572665 EMILIN1Q9Y6C2 1016 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms