RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 HTATSF1O43719 755 aaKnown RBP17.33■□□□□ 0.36
CCDC40-208ENST00000572270 VIL1P09327 827 aaKnown RBP17.33■□□□□ 0.36
CCDC40-208ENST00000572270 EN2P19622 333 aaPredicted RBP17.33■□□□□ 0.36
CCDC40-208ENST00000572270 NF2P35240 595 aa17.33■□□□□ 0.36
CCDC40-208ENST00000572270 TCIRG1Q13488 830 aa17.33■□□□□ 0.36
CCDC40-208ENST00000572270 DCAF8Q5TAQ9 597 aa17.33■□□□□ 0.36
CCDC40-208ENST00000572270 ERBB4Q15303 1308 aa17.32■□□□□ 0.36
CCDC40-208ENST00000572270 PNISRQ8TF01 805 aaKnown RBP17.32■□□□□ 0.36
CCDC40-208ENST00000572270 TMEM106CQ9BVX2 250 aa17.32■□□□□ 0.36
CCDC40-208ENST00000572270 R3HDMLQ9H3Y0 253 aa17.32■□□□□ 0.36
CCDC40-208ENST00000572270 ZNF280AP59817 542 aaPredicted RBP17.31■□□□□ 0.36
CCDC40-208ENST00000572270 SCN9AQ15858 1988 aa17.31■□□□□ 0.36
CCDC40-208ENST00000572270 SH3TC1Q8TE82 1336 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 HSP90AB3PQ58FF7 597 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 AGBL3Q8NEM8 1001 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 CFAP53Q96M91 514 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 POLLQ9UGP5 575 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 TRMT112Q9UI30 125 aaKnown RBP17.3■□□□□ 0.36
CCDC40-208ENST00000572270 NUDCQ9Y266 331 aa17.3■□□□□ 0.36
CCDC40-208ENST00000572270 KIAA0100Q14667 2235 aaKnown RBP17.3■□□□□ 0.36
CCDC40-208ENST00000572270 EIF4A1P60842 406 aaKnown RBP17.29■□□□□ 0.36
CCDC40-208ENST00000572270 GPSM2P81274 684 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 NECTIN2Q92692 538 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 ARMC5Q96C12 935 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 ERO1AQ96HE7 468 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 ZC3H12CQ9C0D7 883 aaKnown RBP17.29■□□□□ 0.36
CCDC40-208ENST00000572270 MYOZ2Q9NPC6 264 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 PTPN22Q9Y2R2 807 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 ZNF609O15014 1411 aa17.29■□□□□ 0.36
CCDC40-208ENST00000572270 CNGB1Q14028 1251 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-208ENST00000572270 RSBN1LQ6PCB5 846 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-208ENST00000572270 NLRP10Q86W26 655 aa17.28■□□□□ 0.36
CCDC40-208ENST00000572270 SCAF8Q9UPN6 1271 aaKnown RBP17.28■□□□□ 0.36
CCDC40-208ENST00000572270 TRIOBPQ9H2D6 2365 aa17.27■□□□□ 0.36
CCDC40-208ENST00000572270 U2AF1L5P0DN76 240 aaPredicted RBP17.27■□□□□ 0.36
CCDC40-208ENST00000572270 U2AF1Q01081 240 aaKnown RBP eCLIP17.27■□□□□ 0.36
CCDC40-208ENST00000572270 PRAMEF18Q5VWM3 479 aa17.27■□□□□ 0.36
CCDC40-208ENST00000572270 ARMC9Q7Z3E5 817 aa17.27■□□□□ 0.36
CCDC40-208ENST00000572270 PSME4Q14997 1843 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 H0YGN5 161 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 USP17L8P0C7I0 530 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 CHRDL2Q6WN34 429 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 TBC1D16Q8TBP0 767 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 CELF1Q92879 486 aaKnown RBP17.26■□□□□ 0.35
CCDC40-208ENST00000572270 OTUD5Q96G74 571 aa17.26■□□□□ 0.35
CCDC40-208ENST00000572270 THUMPD2Q9BTF0 503 aaKnown RBP17.26■□□□□ 0.35
CCDC40-208ENST00000572270 MANSC4A6NHS7 340 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-208ENST00000572270 PER1O15534 1290 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-208ENST00000572270 INHBEP58166 350 aa17.25■□□□□ 0.35
CCDC40-208ENST00000572270 SPRYD7Q5W111 196 aa17.25■□□□□ 0.35
CCDC40-208ENST00000572270 IFNL1Q8IU54 200 aa17.25■□□□□ 0.35
CCDC40-208ENST00000572270 CD99L2Q8TCZ2 262 aa17.25■□□□□ 0.35
CCDC40-208ENST00000572270 EFCC1Q9HA90 598 aa17.25■□□□□ 0.35
CCDC40-208ENST00000572270 PTPN12Q05209 780 aaKnown RBP17.24■□□□□ 0.35
CCDC40-208ENST00000572270 SLC4A8Q2Y0W8 1093 aa17.24■□□□□ 0.35
CCDC40-208ENST00000572270 UFL1O94874 794 aa17.23■□□□□ 0.35
CCDC40-208ENST00000572270 PRKG1Q13976 671 aa17.23■□□□□ 0.35
CCDC40-208ENST00000572270 NBPF11Q86T75 865 aa17.23■□□□□ 0.35
CCDC40-208ENST00000572270 DLG5Q8TDM6 1919 aa17.22■□□□□ 0.35
CCDC40-208ENST00000572270 NEFMP07197 916 aa17.22■□□□□ 0.35
CCDC40-208ENST00000572270 EIF2S2P20042 333 aaKnown RBP17.22■□□□□ 0.35
CCDC40-208ENST00000572270 ZNF333Q96JL9 665 aa17.22■□□□□ 0.35
CCDC40-208ENST00000572270 AIMP1Q12904 312 aaKnown RBP17.21■□□□□ 0.35
CCDC40-208ENST00000572270 NBPF9Q3BBW0 867 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 SLC9C1Q4G0N8 1177 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 OTUD7BQ6GQQ9 843 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 LRP10Q7Z4F1 713 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 ANKIB1Q9P2G1 1089 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 RBM27Q9P2N5 1060 aaKnown RBP17.21■□□□□ 0.35
CCDC40-208ENST00000572270 GGA1Q9UJY5 639 aa17.21■□□□□ 0.35
CCDC40-208ENST00000572270 COL6A3P12111 3177 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 A0A0C4DFX4 3053 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 ANXA1P04083 346 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 SF3B3Q15393 1217 aaKnown RBP17.2■□□□□ 0.34
CCDC40-208ENST00000572270 GMLQ99445 158 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 PODXL2Q9NZ53 605 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-208ENST00000572270 ANGEL1Q9UNK9 670 aaKnown RBP17.2■□□□□ 0.34
CCDC40-208ENST00000572270 LAMB1P07942 1786 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 CEP290O15078 2479 aa17.2■□□□□ 0.34
CCDC40-208ENST00000572270 USP17L3A6NCW0 530 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 USP17L4A6NCW7 530 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 ZBTB48P10074 688 aaPredicted RBP17.19■□□□□ 0.34
CCDC40-208ENST00000572270 RPS8P62241 208 aaKnown RBP17.19■□□□□ 0.34
CCDC40-208ENST00000572270 SP3Q02447 781 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 PDIA6Q15084 440 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 COPS6Q7L5N1 327 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 USP17L1Q7RTZ2 530 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 OGFOD1Q8N543 542 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 ZNF428Q96B54 188 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 SLC10A4Q96EP9 437 aa17.19■□□□□ 0.34
CCDC40-208ENST00000572270 COL4A1P02462 1669 aa17.18■□□□□ 0.34
CCDC40-208ENST00000572270 IGF2BP3O00425 579 aaKnown RBP eCLIP17.18■□□□□ 0.34
CCDC40-208ENST00000572270 MNX1P50219 401 aaPredicted RBP17.18■□□□□ 0.34
CCDC40-208ENST00000572270 CRHR2Q13324 411 aa17.18■□□□□ 0.34
CCDC40-208ENST00000572270 ARHGEF6Q15052 776 aa17.18■□□□□ 0.34
CCDC40-208ENST00000572270 PROSER3Q2NL68 480 aa17.18■□□□□ 0.34
CCDC40-208ENST00000572270 LDLRAD1Q5T700 205 aa17.18■□□□□ 0.34
CCDC40-208ENST00000572270 APOBEC3FQ8IUX4 373 aaKnown RBP17.18■□□□□ 0.34
CCDC40-208ENST00000572270 WNT10BO00744 389 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms