RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 PRPF38AQ8NAV1 312 aaKnown RBP4.34□□□□□ -1.71
SMG6-208ENST00000570874 NGDNQ8NEJ9 315 aaKnown RBP4.34□□□□□ -1.71
SMG6-208ENST00000570874 DDX17Q92841 729 aaKnown RBP4.34□□□□□ -1.71
SMG6-208ENST00000570874 RUNDC1Q96C34 613 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 COG3Q96JB2 828 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 ZNF512BQ96KM6 892 aaPredicted RBP4.34□□□□□ -1.71
SMG6-208ENST00000570874 C8orf48Q96LL4 319 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 CFAP53Q96M91 514 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 PLEKHF1Q96S99 279 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 ORAI2Q96SN7 254 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 CDC5LQ99459 802 aaKnown RBP4.34□□□□□ -1.71
SMG6-208ENST00000570874 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.34□□□□□ -1.71
SMG6-208ENST00000570874 ZHX3Q9H4I2 956 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 IFT122Q9HBG6 1241 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 IFT57Q9NWB7 429 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 RCAN3Q9UKA8 241 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 SYNPO2Q9UMS6 1093 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 RNF123Q5XPI4 1314 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 AATKQ6ZMQ8 1374 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 USP31Q70CQ4 1352 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 MST1RQ04912 1400 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 C1orf167Q5SNV9 1468 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 SLIT3O75094 1523 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 ITGB4P16144 1822 aa4.34□□□□□ -1.71
SMG6-208ENST00000570874 C5P01031 1676 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 TMEM94Q12767 1356 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 MAP3K19Q56UN5 1328 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 SOCS7O14512 581 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 DIAPH1O60610 1272 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 DNAJC6O75061 913 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 VIL1P09327 827 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 IL13P35225 146 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 SSR1P43307 286 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 RRP1P56182 461 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 MTA1Q13330 715 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 CAMK2BQ13554 666 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 HSP90AA2PQ14568 343 aaPredicted RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 ENOX2Q16206 610 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 TMEM259Q4ZIN3 620 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 ESCO1Q5FWF5 840 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 C20orf194Q5TEA3 1177 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 ANKRD23Q86SG2 305 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 TRMT2AQ8IZ69 625 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 ATL2Q8NHH9 583 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 PPM1EQ8WY54 764 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 RELTQ969Z4 430 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 PHACTR3Q96KR7 559 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 LARP6Q9BRS8 491 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 CARD10Q9BWT7 1032 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 OSBPL2Q9H1P3 480 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 TYW1Q9NV66 732 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 DMGDHQ9UI17 866 aaKnown RBP4.33□□□□□ -1.72
SMG6-208ENST00000570874 PHF8Q9UPP1 1060 aa4.33□□□□□ -1.72
SMG6-208ENST00000570874 AFDNP55196 1824 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 PKD1L3Q7Z443 1732 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 ROBO1Q9Y6N7 1651 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 TTC21AQ8NDW8 1320 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 ZNF335Q9H4Z2 1342 aaPredicted RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 FANCIQ9NVI1 1328 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 PALM3A6NDB9 673 aaPredicted RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 ARHGAP33O14559 1287 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 GNPATO15228 680 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 HSP90AB1P08238 724 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 PDGFRBP09619 1106 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 PDE4AP27815 886 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 PRKAR2BP31323 418 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 ANP32AP39687 249 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 PEX19P40855 299 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 TMPOP42166 694 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 RAD51AP2Q09MP3 1159 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 SEMA3FQ13275 785 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 PDE3BQ13370 1112 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 EIF4A2Q14240 407 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 FAM161AQ3B820 660 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 RPAINQ86UA6 219 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 MTMR14Q8NCE2 650 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 LSM14AQ8ND56 463 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 EXOC6Q8TAG9 804 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 ENOX1Q8TC92 643 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 STAG1Q8WVM7 1258 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 CEP89Q96ST8 783 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 THUMPD2Q9BTF0 503 aaKnown RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 BACH2Q9BYV9 841 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 CASS4Q9NQ75 786 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 BIN2Q9UBW5 565 aaPredicted RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 TNNQ9UQP3 1299 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 AKAP2Q9Y2D5 859 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 CTDP1Q9Y5B0 961 aaPredicted RBP4.32□□□□□ -1.72
SMG6-208ENST00000570874 PHLPP1O60346 1717 aa4.32□□□□□ -1.72
SMG6-208ENST00000570874 PXDNQ92626 1479 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 AK9Q5TCS8 1911 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 FAM83GA6ND36 823 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 IFRD1O00458 451 aaPredicted RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 NPHP1O15259 732 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 FOXO3O43524 673 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 GFRA3O60609 400 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 BCAR3O75815 825 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 LDHAP00338 332 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 FOSP01100 380 aaPredicted RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 FGAP02671 866 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms