RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 BICDL1Q6ZP65 573 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 NLRP10Q86W26 655 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 RAB11FIP4Q86YS3 637 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 XAGE2Q96GT9 111 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 C8orf37Q96NL8 207 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.85□□□□□ -0.51
VPS53-206ENST00000570359 NHSL1Q5SYE7 1610 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 STX6O43752 255 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 ST3GAL1Q11201 340 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 MCMDC2Q4G0Z9 681 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 INTS4Q96HW7 963 aaKnown RBP11.84□□□□□ -0.51
VPS53-206ENST00000570359 TMEM63CQ9P1W3 806 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 WDR33Q9C0J8 1336 aaKnown RBP11.84□□□□□ -0.51
VPS53-206ENST00000570359 TNS2Q63HR2 1409 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 ZAP70P43403 619 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 CCDC158Q5M9N0 1113 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 USP48Q86UV5 1035 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 KBTBD3Q8NAB2 608 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 ZBTB38Q8NAP3 1195 aaPredicted RBP11.84□□□□□ -0.51
VPS53-206ENST00000570359 MED23Q9ULK4 1368 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 UBR2Q8IWV8 1755 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 KDM4AO75164 1064 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 CYP21A2P08686 494 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 PTMSP20962 102 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 TJP1Q07157 1748 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 ITGB4P16144 1822 aa11.84□□□□□ -0.51
VPS53-206ENST00000570359 NUP188Q5SRE5 1749 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 M0R2C6 588 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 PSMA5P28066 241 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 Q6ZUG5 572 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 STK11IPQ8N1F8 1099 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 MARCH10Q8NA82 808 aaPredicted RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 BCL9O00512 1426 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 UBN2Q6ZU65 1347 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 JAK2O60674 1132 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 PCCAP05165 728 aaPredicted RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 ZSCAN22P10073 491 aaPredicted RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 RPS6KB1P23443 525 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 CCT2P78371 535 aaKnown RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 DNM1Q05193 864 aaKnown RBP11.83□□□□□ -0.52
VPS53-206ENST00000570359 ATP2B3Q16720 1220 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 CCDC24Q8N4L8 307 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 BRF1Q92994 677 aa11.83□□□□□ -0.52
VPS53-206ENST00000570359 CRKLP46109 303 aaKnown RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 NASPP49321 788 aaPredicted RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 NEK1Q96PY6 1258 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 IQSEC3Q9UPP2 1182 aaPredicted RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 ANKRD18BA2A2Z9 1011 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 IDH1O75874 414 aaKnown RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 CTSWP56202 376 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 TOB2Q14106 344 aaPredicted RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 LARP1BQ659C4 914 aaKnown RBP11.82□□□□□ -0.52
VPS53-206ENST00000570359 STOX1Q6ZVD7 989 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 PTF1AQ7RTS3 328 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 TTLL11Q8NHH1 800 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 SEC31BQ9NQW1 1179 aa11.82□□□□□ -0.52
VPS53-206ENST00000570359 MAST3O60307 1309 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 CLEC17AQ6ZS10 378 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 CDC37L1Q7L3B6 337 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 OSBP2Q969R2 916 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 APOBRQ0VD83 1088 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 ITPK1Q13572 414 aa11.81□□□□□ -0.52
VPS53-206ENST00000570359 GPHNQ9NQX3 736 aaPredicted RBP11.81□□□□□ -0.52
VPS53-206ENST00000570359 LOC102724428A0A0B4J2F2 783 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 F13A1P00488 732 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 APPP05067 770 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 SIK1P57059 783 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 CEBPZQ03701 1054 aaKnown RBP11.8□□□□□ -0.52
VPS53-206ENST00000570359 SUSD4Q5VX71 490 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 VSIG10Q8N0Z9 540 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 NGLY1Q96IV0 654 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 RBSNQ9H1K0 784 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 NCOA5Q9HCD5 579 aaKnown RBP11.8□□□□□ -0.52
VPS53-206ENST00000570359 NIP7Q9Y221 180 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS53-206ENST00000570359 SPATA31A1Q5TZJ5 1347 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 PAPPAQ13219 1627 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 GUCY1B3Q02153 619 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 FAM43AQ8N2R8 423 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 MPNDQ8N594 471 aa11.8□□□□□ -0.52
VPS53-206ENST00000570359 TFIP11Q9UBB9 837 aaKnown RBP11.8□□□□□ -0.52
VPS53-206ENST00000570359 RNF113AO15541 343 aaKnown RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 HSPD1P10809 573 aaKnown RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 TRIM44Q96DX7 344 aaPredicted RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 RRAGDQ9NQL2 400 aaPredicted RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 U3KPZ7 1027 aaPredicted RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 EPB41L2O43491 1005 aaKnown RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 PHKA1P46020 1223 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 TM6SF1Q9BZW5 370 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 PUS7LQ9H0K6 701 aaKnown RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 SH2B1Q9NRF2 756 aaPredicted RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 CCDC87Q9NVE4 849 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 MTMR6Q9Y217 621 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 AKAP2Q9Y2D5 859 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 COL16A1Q07092 1604 aaPredicted RBP11.79□□□□□ -0.52
VPS53-206ENST00000570359 DISP2A7MBM2 1401 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 UBAP1LF5GYI3 381 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 MCAMP43121 646 aa11.79□□□□□ -0.52
VPS53-206ENST00000570359 ZSCAN31Q96LW9 406 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms