RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZSCAN20P17040 1043 aaPredicted RBP16.95■□□□□ 0.3
VPS35-210ENST00000568784 DMTNQ08495 405 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 SCRN1Q12765 414 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 TAF7LQ5H9L4 462 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 LMBR1LQ6UX01 489 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 ZNF215Q9UL58 517 aaPredicted RBP16.95■□□□□ 0.3
VPS35-210ENST00000568784 APPP05067 770 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 ANKRD13DQ6ZTN6 518 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 PTPN21Q16825 1174 aa16.94■□□□□ 0.3
VPS35-210ENST00000568784 MCMDC2Q4G0Z9 681 aa16.94■□□□□ 0.3
VPS35-210ENST00000568784 NAT10Q9H0A0 1025 aaKnown RBP16.94■□□□□ 0.3
VPS35-210ENST00000568784 DDX21Q9NR30 783 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS35-210ENST00000568784 BABAM1Q9NWV8 329 aa16.94■□□□□ 0.3
VPS35-210ENST00000568784 TPM4P67936 248 aa16.94■□□□□ 0.3
VPS35-210ENST00000568784 MAPK8IP2Q13387 824 aaPredicted RBP16.94■□□□□ 0.3
VPS35-210ENST00000568784 AMOTQ4VCS5 1084 aa16.94■□□□□ 0.3
VPS35-210ENST00000568784 ELF2Q15723 593 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 TNNI3KQ59H18 835 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 FPGT-TNNI3KV9GXZ4 949 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 ATP2B1P20020 1258 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 LMOD1P29536 600 aaPredicted RBP16.93■□□□□ 0.3
VPS35-210ENST00000568784 KIF18AQ8NI77 898 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 ZSCAN16Q9H4T2 348 aaPredicted RBP16.93■□□□□ 0.3
VPS35-210ENST00000568784 MARCKSP29966 332 aaPredicted RBP16.93■□□□□ 0.3
VPS35-210ENST00000568784 TTLL5Q6EMB2 1281 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 TRERF1Q96PN7 1200 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 TOMM22Q9NS69 142 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 PAXBP1Q9Y5B6 917 aa16.93■□□□□ 0.3
VPS35-210ENST00000568784 GCP02774 474 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 IGKV5-2P06315 115 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 HOXB7P09629 217 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 TDRD7Q8NHU6 1098 aaKnown RBP16.92■□□□□ 0.3
VPS35-210ENST00000568784 GPHNQ9NQX3 736 aaPredicted RBP16.92■□□□□ 0.3
VPS35-210ENST00000568784 GCKRQ14397 625 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 LRRC8AQ8IWT6 810 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 PDILTQ8N807 584 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 ELP1O95163 1332 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 NRKQ7Z2Y5 1582 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 GTF2F1P35269 517 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS35-210ENST00000568784 RALYLQ86SE5 291 aaKnown RBP16.92■□□□□ 0.3
VPS35-210ENST00000568784 GJB4Q9NTQ9 266 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 IFNKQ9P0W0 207 aa16.92■□□□□ 0.3
VPS35-210ENST00000568784 SFPQP23246 707 aaKnown RBP eCLIP16.91■□□□□ 0.3
VPS35-210ENST00000568784 RESTQ13127 1097 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 KAZALD1Q96I82 304 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 ORAI2Q96SN7 254 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 TBX22Q9Y458 520 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 NEURL1BA8MQ27 555 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 IFIT1P09914 478 aaKnown RBP16.91■□□□□ 0.3
VPS35-210ENST00000568784 KCNH5Q8NCM2 988 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 ZNF594Q96JF6 807 aaPredicted RBP16.91■□□□□ 0.3
VPS35-210ENST00000568784 C8orf76Q96K31 380 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 ZBTB3Q9H5J0 574 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 A0A0G2JLW4 131 aa16.91■□□□□ 0.3
VPS35-210ENST00000568784 SERPINC1P01008 464 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 PDIA4P13667 645 aaKnown RBP16.9■□□□□ 0.3
VPS35-210ENST00000568784 RXRAP19793 462 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 SYT10Q6XYQ8 523 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 DHX32Q7L7V1 743 aaKnown RBP16.9■□□□□ 0.3
VPS35-210ENST00000568784 ADAMTS13Q76LX8 1427 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 SNW1Q13573 536 aaKnown RBP16.9■□□□□ 0.3
VPS35-210ENST00000568784 CREBRFQ8IUR6 639 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 ZNF496Q96IT1 587 aaPredicted RBP16.9■□□□□ 0.3
VPS35-210ENST00000568784 GOLPH3LQ9H4A5 285 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 MTX1Q13505 466 aa16.9■□□□□ 0.3
VPS35-210ENST00000568784 ZNF790Q6PG37 636 aa16.89■□□□□ 0.29
VPS35-210ENST00000568784 MNS1Q8NEH6 495 aa16.89■□□□□ 0.29
VPS35-210ENST00000568784 ITSN1Q15811 1721 aa16.89■□□□□ 0.29
VPS35-210ENST00000568784 GOLGA8BA8MQT2 603 aa16.89■□□□□ 0.29
VPS35-210ENST00000568784 GTPBP4Q9BZE4 634 aaKnown RBP16.89■□□□□ 0.29
VPS35-210ENST00000568784 PLA2G4DQ86XP0 818 aa16.89■□□□□ 0.29
VPS35-210ENST00000568784 MRPS27Q92552 414 aaKnown RBP16.89■□□□□ 0.29
VPS35-210ENST00000568784 ORC3Q9UBD5 711 aaPredicted RBP16.89■□□□□ 0.29
VPS35-210ENST00000568784 CFAP100Q494V2 611 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 PTPRUQ92729 1446 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 CTAGE5O15320 804 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 SLC3A2P08195 630 aaKnown RBP16.88■□□□□ 0.29
VPS35-210ENST00000568784 CDK11BP21127 795 aaKnown RBP16.88■□□□□ 0.29
VPS35-210ENST00000568784 CHRNA2Q15822 529 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 PAG1Q9NWQ8 432 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 OGFRQ9NZT2 677 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 FAM160A1Q05DH4 1040 aa16.88■□□□□ 0.29
VPS35-210ENST00000568784 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.87■□□□□ 0.29
VPS35-210ENST00000568784 CCDC82Q8N4S0 544 aa16.87■□□□□ 0.29
VPS35-210ENST00000568784 NSUN7Q8NE18 718 aaKnown RBP16.87■□□□□ 0.29
VPS35-210ENST00000568784 PEAK1Q9H792 1746 aa16.87■□□□□ 0.29
VPS35-210ENST00000568784 KLF18A0A0U1RQI7 1052 aa16.87■□□□□ 0.29
VPS35-210ENST00000568784 TATP17735 454 aaPredicted RBP16.87■□□□□ 0.29
VPS35-210ENST00000568784 URI1O94763 535 aaPredicted RBP16.87■□□□□ 0.29
VPS35-210ENST00000568784 STOX1Q6ZVD7 989 aa16.87■□□□□ 0.29
VPS35-210ENST00000568784 NFXL1Q6ZNB6 911 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 DNAI1Q9UI46 699 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 USP42Q9H9J4 1324 aaKnown RBP16.86■□□□□ 0.29
VPS35-210ENST00000568784 RICTORQ6R327 1708 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 POLR3GO15318 223 aaPredicted RBP16.86■□□□□ 0.29
VPS35-210ENST00000568784 ATP5JP18859 108 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 CABP4P57796 275 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 XPO4Q9C0E2 1151 aaKnown RBP16.86■□□□□ 0.29
VPS35-210ENST00000568784 GOLGA8FQ08AF8 430 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 GOLGA8DPQ0D2H9 430 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms