RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 VTI1AQ96AJ9 217 aa6.87□□□□□ -1.31
SPG11-222ENST00000560435 MUC3BQ9H195 1237 aa6.87□□□□□ -1.31
SPG11-222ENST00000560435 USP20Q9Y2K6 914 aa6.87□□□□□ -1.31
SPG11-222ENST00000560435 MMP20O60882 483 aa6.86□□□□□ -1.31
SPG11-222ENST00000560435 MED26O95402 600 aa6.86□□□□□ -1.31
SPG11-222ENST00000560435 YBX3P16989 372 aaKnown RBP eCLIP6.86□□□□□ -1.31
SPG11-222ENST00000560435 RGL4Q8IZJ4 473 aa6.86□□□□□ -1.31
SPG11-222ENST00000560435 NSUN5Q96P11 429 aaKnown RBP6.86□□□□□ -1.31
SPG11-222ENST00000560435 STOML1Q9UBI4 398 aa6.86□□□□□ -1.31
SPG11-222ENST00000560435 TGFB1P01137 390 aa6.85□□□□□ -1.31
SPG11-222ENST00000560435 GP2P55259 537 aaKnown RBP6.85□□□□□ -1.31
SPG11-222ENST00000560435 TREML1Q86YW5 311 aa6.85□□□□□ -1.31
SPG11-222ENST00000560435 CMTR1Q8N1G2 835 aaKnown RBP6.85□□□□□ -1.31
SPG11-222ENST00000560435 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.85□□□□□ -1.31
SPG11-222ENST00000560435 KCNMB2Q9Y691 235 aa6.85□□□□□ -1.31
SPG11-222ENST00000560435 OAS3Q9Y6K5 1087 aaKnown RBP6.85□□□□□ -1.31
SPG11-222ENST00000560435 DHX15O43143 795 aaKnown RBP6.84□□□□□ -1.31
SPG11-222ENST00000560435 TAL1P17542 331 aaPredicted RBP6.84□□□□□ -1.31
SPG11-222ENST00000560435 ARXQ96QS3 562 aa6.84□□□□□ -1.31
SPG11-222ENST00000560435 UBL7Q96S82 380 aaPredicted RBP6.84□□□□□ -1.31
SPG11-222ENST00000560435 PPP1R12CQ9BZL4 782 aa6.84□□□□□ -1.31
SPG11-222ENST00000560435 LRFN2Q9ULH4 789 aa6.84□□□□□ -1.31
SPG11-222ENST00000560435 TRIM33Q9UPN9 1127 aa6.84□□□□□ -1.31
SPG11-222ENST00000560435 PPME1Q9Y570 386 aa6.84□□□□□ -1.31
SPG11-222ENST00000560435 SPINK2P20155 84 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 UVSSAQ2YD98 709 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 ZDHHC13Q8IUH4 622 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 ARMC10Q8N2F6 343 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 FNBP4Q8N3X1 1017 aaPredicted RBP6.83□□□□□ -1.32
SPG11-222ENST00000560435 CEP41Q9BYV8 373 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 VRTNQ9H8Y1 702 aa6.83□□□□□ -1.32
SPG11-222ENST00000560435 INTS5Q6P9B9 1019 aaKnown RBP6.82□□□□□ -1.32
SPG11-222ENST00000560435 NLRP13Q86W25 1043 aa6.82□□□□□ -1.32
SPG11-222ENST00000560435 GALNT11Q8NCW6 608 aa6.82□□□□□ -1.32
SPG11-222ENST00000560435 WISP1O95388 367 aa6.81□□□□□ -1.32
SPG11-222ENST00000560435 GRIK1P39086 918 aa6.81□□□□□ -1.32
SPG11-222ENST00000560435 NFIAQ12857 509 aa6.81□□□□□ -1.32
SPG11-222ENST00000560435 PROSER2Q86WR7 435 aaPredicted RBP6.81□□□□□ -1.32
SPG11-222ENST00000560435 CD68P34810 354 aaPredicted RBP6.8□□□□□ -1.32
SPG11-222ENST00000560435 COX20Q5RI15 118 aa6.8□□□□□ -1.32
SPG11-222ENST00000560435 ACAD11Q709F0 780 aa6.8□□□□□ -1.32
SPG11-222ENST00000560435 UTP4Q969X6 686 aaKnown RBP6.8□□□□□ -1.32
SPG11-222ENST00000560435 FAM46AQ96IP4 442 aaKnown RBP6.8□□□□□ -1.32
SPG11-222ENST00000560435 C7orf69Q9H7B7 122 aa6.8□□□□□ -1.32
SPG11-222ENST00000560435 RNF114Q9Y508 228 aa6.8□□□□□ -1.32
SPG11-222ENST00000560435 LINC01387J3KSC0 135 aa6.79□□□□□ -1.32
SPG11-222ENST00000560435 TM4SF5O14894 197 aa6.79□□□□□ -1.32
SPG11-222ENST00000560435 TRIP4Q15650 581 aaPredicted RBP6.79□□□□□ -1.32
SPG11-222ENST00000560435 RNF43Q68DV7 783 aa6.79□□□□□ -1.32
SPG11-222ENST00000560435 OR13H1Q8NG92 308 aa6.79□□□□□ -1.32
SPG11-222ENST00000560435 DBNDD2Q9BQY9 259 aa6.79□□□□□ -1.32
SPG11-222ENST00000560435 ADAMTS4O75173 837 aa6.78□□□□□ -1.32
SPG11-222ENST00000560435 LMOD1P29536 600 aaPredicted RBP6.78□□□□□ -1.32
SPG11-222ENST00000560435 DTX1Q86Y01 620 aa6.78□□□□□ -1.32
SPG11-222ENST00000560435 TRIM42Q8IWZ5 723 aa6.78□□□□□ -1.32
SPG11-222ENST00000560435 CLUAP1Q96AJ1 413 aa6.78□□□□□ -1.32
SPG11-222ENST00000560435 CALR3Q96L12 384 aaKnown RBP6.78□□□□□ -1.32
SPG11-222ENST00000560435 KCNK4Q9NYG8 393 aa6.78□□□□□ -1.32
SPG11-222ENST00000560435 PRR19A6NJB7 356 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 SMNDC1O75940 238 aaKnown RBP eCLIP6.77□□□□□ -1.33
SPG11-222ENST00000560435 CDC27P30260 824 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 ATP11AP98196 1134 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 HYAL2Q12891 473 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 FKBP5Q13451 457 aaPredicted RBP6.77□□□□□ -1.33
SPG11-222ENST00000560435 KIAA1211Q6ZU35 1233 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 ETFBKMTQ8IXQ9 262 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 KLHL23Q8NBE8 558 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 FAM200AQ8TCP9 573 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 MYRFLQ96LU7 910 aa6.77□□□□□ -1.33
SPG11-222ENST00000560435 COL13A1Q5TAT6 717 aaPredicted RBP6.76□□□□□ -1.33
SPG11-222ENST00000560435 CEP135Q66GS9 1140 aa6.76□□□□□ -1.33
SPG11-222ENST00000560435 TXNDC11Q6PKC3 985 aa6.76□□□□□ -1.33
SPG11-222ENST00000560435 SPACA7Q96KW9 195 aa6.76□□□□□ -1.33
SPG11-222ENST00000560435 LACRTQ9GZZ8 138 aa6.76□□□□□ -1.33
SPG11-222ENST00000560435 ARID1BQ8NFD5 2236 aaPredicted RBP6.76□□□□□ -1.33
SPG11-222ENST00000560435 HMX2A2RU54 273 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 UBAP1LF5GYI3 381 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 FSCN2O14926 492 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 WNT11O96014 354 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 BRD2P25440 801 aaKnown RBP6.75□□□□□ -1.33
SPG11-222ENST00000560435 DUOXA2Q1HG44 320 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 CLEC10AQ8IUN9 316 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 FAM13BQ9NYF5 915 aa6.75□□□□□ -1.33
SPG11-222ENST00000560435 FAM117BQ6P1L5 589 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.74□□□□□ -1.33
SPG11-222ENST00000560435 FAM20CQ8IXL6 584 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 FOXD4L4Q8WXT5 416 aaPredicted RBP6.74□□□□□ -1.33
SPG11-222ENST00000560435 PIK3R5Q8WYR1 880 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 FAM83CQ9BQN1 747 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 CARD10Q9BWT7 1032 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 RASSF4Q9H2L5 321 aa6.74□□□□□ -1.33
SPG11-222ENST00000560435 KIF4AO95239 1232 aa6.73□□□□□ -1.33
SPG11-222ENST00000560435 C16orf46Q6P387 395 aa6.73□□□□□ -1.33
SPG11-222ENST00000560435 SHKBP1Q8TBC3 707 aa6.73□□□□□ -1.33
SPG11-222ENST00000560435 SAP130Q9H0E3 1048 aa6.73□□□□□ -1.33
SPG11-222ENST00000560435 A6NJR5 290 aa6.72□□□□□ -1.33
SPG11-222ENST00000560435 ADAM11O75078 769 aa6.72□□□□□ -1.33
SPG11-222ENST00000560435 EPHA1P21709 976 aa6.72□□□□□ -1.33
SPG11-222ENST00000560435 CDC25BP30305 580 aa6.72□□□□□ -1.33
SPG11-222ENST00000560435 SCNN1AP37088 669 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms