RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 LINC00116Q8NCU8 138 aa16.92■□□□□ 0.3
CARMIL3-203ENST00000560349 TAF5LO75529 589 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 BICDL1Q6ZP65 573 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 ZNF34Q8IZ26 560 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 KBTBD3Q8NAB2 608 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 SEC31BQ9NQW1 1179 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 NIP7Q9Y221 180 aaKnown RBP eCLIP16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 A0A0G2JLW4 131 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 DDX11L8A8MPP1 907 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 CAMTA2O94983 1202 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 PLA2G12BQ9BX93 195 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 RIC1Q4ADV7 1423 aa16.91■□□□□ 0.3
CARMIL3-203ENST00000560349 ANKRD18BA2A2Z9 1011 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 GOLGA6L3A6NEY3 463 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 CYP2E1P05181 493 aaPredicted RBP16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 ZKSCAN1P17029 563 aaPredicted RBP16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 VPS72Q15906 364 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 TTC39AQ5SRH9 613 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 JCADQ9P266 1359 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 ERVV-1B6SEH8 477 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 MCM2P49736 904 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 PDRG1Q9NUG6 133 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 CDHR2Q9BYE9 1310 aa16.9■□□□□ 0.3
CARMIL3-203ENST00000560349 CUL4AQ13619 759 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 IL17RAQ96F46 866 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 RIPOR2Q9Y4F9 1068 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 PDE8AO60658 829 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 NUCB2P80303 420 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 ATP2B3Q16720 1220 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 NECAB1Q8N987 351 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 CWC22Q9HCG8 908 aaKnown RBP16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 NWD2Q9ULI1 1742 aa16.89■□□□□ 0.29
CARMIL3-203ENST00000560349 EPB41L2O43491 1005 aaKnown RBP16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 ZAP70P43403 619 aa16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 MEX3CQ5U5Q3 659 aaKnown RBP16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 CCDC83Q8IWF9 413 aa16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 GPR108Q9NPR9 543 aa16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 CYP46A1Q9Y6A2 500 aa16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 CCDC24Q8N4L8 307 aa16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 RRAGDQ9NQL2 400 aaPredicted RBP16.88■□□□□ 0.29
CARMIL3-203ENST00000560349 SH3TC1Q8TE82 1336 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 MCMDC2Q4G0Z9 681 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 TPRNQ4KMQ1 711 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 CCDC158Q5M9N0 1113 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 LRRC2Q9BYS8 371 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 PANK2Q9BZ23 570 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 ZSWIM6Q9HCJ5 1215 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 LIMCH1Q9UPQ0 1083 aa16.87■□□□□ 0.29
CARMIL3-203ENST00000560349 AMIGO3Q86WK7 504 aa16.86■□□□□ 0.29
CARMIL3-203ENST00000560349 UTP14AQ9BVJ6 771 aaKnown RBP16.86■□□□□ 0.29
CARMIL3-203ENST00000560349 ANKRD36CQ5JPF3 1778 aa16.86■□□□□ 0.29
CARMIL3-203ENST00000560349 M0R2C6 588 aa16.86■□□□□ 0.29
CARMIL3-203ENST00000560349 AKAP2Q9Y2D5 859 aa16.86■□□□□ 0.29
CARMIL3-203ENST00000560349 CYP21A2P08686 494 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 HSPA1LP34931 641 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 STK3Q13188 491 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 FNBP4Q8N3X1 1017 aaPredicted RBP16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 SRP68Q9UHB9 627 aaKnown RBP16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 MAST3O60307 1309 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 MCAMP43121 646 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 ME3Q16798 604 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 WASHC4Q2M389 1173 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 C3orf67Q6ZVT6 689 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 TPCN1Q9ULQ1 816 aa16.85■□□□□ 0.29
CARMIL3-203ENST00000560349 NCLP19338 710 aaKnown RBP16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 PHKA1P46020 1223 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 ST3GAL1Q11201 340 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 SMARCC1Q92922 1105 aaPredicted RBP16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 OSBP2Q969R2 916 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 GDPD2Q9HCC8 539 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 WTIPA6NIX2 430 aaPredicted RBP16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 NTSR2O95665 410 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 TTLL5Q6EMB2 1281 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 BLOC1S2Q6QNY1 142 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 VGLL2Q8N8G2 317 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 KCNB2Q92953 911 aa16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 RPAP1Q9BWH6 1393 aaPredicted RBP16.84■□□□□ 0.29
CARMIL3-203ENST00000560349 PRPF40AO75400 957 aaKnown RBP16.83■□□□□ 0.29
CARMIL3-203ENST00000560349 RNF20Q5VTR2 975 aa16.83■□□□□ 0.29
CARMIL3-203ENST00000560349 PDE8BO95263 885 aa16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 DDX49Q9Y6V7 483 aaKnown RBP16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 MYH3P11055 1940 aa16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 RNF113AO15541 343 aaKnown RBP16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 ZMYM1Q5SVZ6 1142 aa16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 STOX1Q6ZVD7 989 aa16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 INTS4Q96HW7 963 aaKnown RBP16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 MPHOSPH8Q99549 860 aa16.83■□□□□ 0.28
CARMIL3-203ENST00000560349 GOLGA6L22H0YM25 854 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 ERFEQ4G0M1 354 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 COL4A1P02462 1669 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 GNPATO15228 680 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 PHF14O94880 888 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 BRD1O95696 1058 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 HAND2P61296 217 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 TM6SF1Q9BZW5 370 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 ZMYND15Q9H091 742 aa16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 PUS7LQ9H0K6 701 aaKnown RBP16.82■□□□□ 0.28
CARMIL3-203ENST00000560349 PPFIA3O75145 1194 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 HSPD1P10809 573 aaKnown RBP16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 RPS6KB1P23443 525 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms