RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 IFT57Q9NWB7 429 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 TSPYL4Q9UJ04 414 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 NHSQ6T4R5 1651 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 UBR2Q8IWV8 1755 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 SBF2Q86WG5 1849 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 CHL1O00533 1208 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 HTATSF1O43719 755 aaKnown RBP6.76□□□□□ -1.33
SPG11-220ENST00000559933 CENPBP07199 599 aaPredicted RBP6.76□□□□□ -1.33
SPG11-220ENST00000559933 RXRBP28702 533 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 CTHP32929 405 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 CABP4P57796 275 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 RBM6P78332 1123 aaKnown RBP6.76□□□□□ -1.33
SPG11-220ENST00000559933 PDE3BQ13370 1112 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 RC3H1Q5TC82 1133 aaKnown RBP6.76□□□□□ -1.33
SPG11-220ENST00000559933 EHBP1Q8NDI1 1231 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 PIGBQ92521 554 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 TSC1Q92574 1164 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 CDCA7Q9BWT1 371 aaPredicted RBP6.76□□□□□ -1.33
SPG11-220ENST00000559933 PCDHB15Q9Y5E8 787 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 PLEKHG2Q9H7P9 1386 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 BTAF1O14981 1849 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 BCL9O00512 1426 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 IL16Q14005 1332 aa6.76□□□□□ -1.33
SPG11-220ENST00000559933 KAT6BQ8WYB5 2073 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 BTBD11A6QL63 1104 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 PIP4K2AP48426 406 aaPredicted RBP6.75□□□□□ -1.33
SPG11-220ENST00000559933 GNAI1P63096 354 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 IRX6P78412 446 aaPredicted RBP6.75□□□□□ -1.33
SPG11-220ENST00000559933 KCNH2Q12809 1159 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 TAF7Q15545 349 aaPredicted RBP6.75□□□□□ -1.33
SPG11-220ENST00000559933 MYSM1Q5VVJ2 828 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 PTCRAQ6ISU1 281 aaPredicted RBP6.75□□□□□ -1.33
SPG11-220ENST00000559933 NGEFQ8N5V2 710 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 MYH16Q9H6N6 1097 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 EVA1BQ9NVM1 165 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 ASAP1Q9ULH1 1129 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 TNNQ9UQP3 1299 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 TJP1Q07157 1748 aa6.75□□□□□ -1.33
SPG11-220ENST00000559933 AXIN1O15169 862 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 PLIN1O60240 522 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 PTCD1O75127 700 aaKnown RBP6.74□□□□□ -1.33
SPG11-220ENST00000559933 BCAR3O75815 825 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 HSP90AB1P08238 724 aaKnown RBP6.74□□□□□ -1.33
SPG11-220ENST00000559933 KCNQ4P56696 695 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 EIF4A1P60842 406 aaKnown RBP6.74□□□□□ -1.33
SPG11-220ENST00000559933 CTC1Q2NKJ3 1217 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 KRT27Q7Z3Y8 459 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 ZNF496Q96IT1 587 aaPredicted RBP6.74□□□□□ -1.33
SPG11-220ENST00000559933 UNC93B1Q9H1C4 597 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 ATG3Q9NT62 314 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 TMOD3Q9NYL9 352 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 LAMB4A4D0S4 1761 aa6.74□□□□□ -1.33
SPG11-220ENST00000559933 TNS1Q9HBL0 1735 aaKnown RBP6.73□□□□□ -1.33
SPG11-220ENST00000559933 CFAP99D6REC4 459 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 ANXA1P04083 346 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 CLK2P49760 499 aaKnown RBP6.73□□□□□ -1.33
SPG11-220ENST00000559933 SKOR1P84550 965 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 CALD1Q05682 793 aaKnown RBP6.73□□□□□ -1.33
SPG11-220ENST00000559933 TUSC1Q2TAM9 212 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 ZNF790Q6PG37 636 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 LYPD8Q6UX82 237 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 HELBQ8NG08 1087 aaPredicted RBP6.73□□□□□ -1.33
SPG11-220ENST00000559933 SLC4A9Q96Q91 983 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 RCAN3Q9UKA8 241 aa6.73□□□□□ -1.33
SPG11-220ENST00000559933 SUPT16HQ9Y5B9 1047 aaKnown RBP6.73□□□□□ -1.33
SPG11-220ENST00000559933 PALLDQ8WX93 1383 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 ERVV-2B6SEH9 535 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 ST8SIA5O15466 376 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 VAMP4O75379 141 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 TRIM37O94972 964 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 ALDH1A1P00352 501 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 AVPP01185 164 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 EIF2S2P20042 333 aaKnown RBP6.72□□□□□ -1.33
SPG11-220ENST00000559933 RARSP54136 660 aaKnown RBP6.72□□□□□ -1.33
SPG11-220ENST00000559933 PROSER3Q2NL68 480 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 TWISTNBQ3B726 338 aaPredicted RBP6.72□□□□□ -1.33
SPG11-220ENST00000559933 LINC01559Q495D7 138 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 SSH1Q8WYL5 1049 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 DDRGK1Q96HY6 314 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 AAASQ9NRG9 546 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 POLR3EQ9NVU0 708 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 LIMD1Q9UGP4 676 aa6.72□□□□□ -1.33
SPG11-220ENST00000559933 HEG1Q9ULI3 1381 aa6.71□□□□□ -1.33
SPG11-220ENST00000559933 J3QL48 77 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 SMPD1P17405 629 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 C20orf194Q5TEA3 1177 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 SMIM5Q71RC9 77 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 DNAJC10Q8IXB1 793 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 TTC5Q8N0Z6 440 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 CRIPAKQ8N1N5 446 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 BAP1Q92560 729 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 KDM4CQ9H3R0 1056 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 SMC4Q9NTJ3 1288 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 USP16Q9Y5T5 823 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 WASF2Q9Y6W5 498 aa6.71□□□□□ -1.34
SPG11-220ENST00000559933 LY75O60449 1722 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 GIGYF1O75420 1035 aaPredicted RBP6.7□□□□□ -1.34
SPG11-220ENST00000559933 RRP1P56182 461 aaKnown RBP6.7□□□□□ -1.34
SPG11-220ENST00000559933 SH3BP2P78314 561 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 ITPK1Q13572 414 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms