RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NAP1L2Q9ULW6 460 aaPredicted RBP15.27■□□□□ 0.03
LDLR-207ENST00000558013 JCADQ9P266 1359 aa15.27■□□□□ 0.03
LDLR-207ENST00000558013 GOLGA6L4A6NEF3 574 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 PDCP20941 246 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 APOBRQ0VD83 1088 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 MAP3K11Q16584 847 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 TTLL5Q6EMB2 1281 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 PIBF1Q8WXW3 757 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
LDLR-207ENST00000558013 PLBD2Q8NHP8 589 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 GUCY1B3Q02153 619 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 ANO6Q4KMQ2 910 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 TNMDQ9H2S6 317 aa15.26■□□□□ 0.03
LDLR-207ENST00000558013 GPHNQ9NQX3 736 aaPredicted RBP15.26■□□□□ 0.03
LDLR-207ENST00000558013 ADAMTS7Q9UKP4 1686 aa15.25■□□□□ 0.03
LDLR-207ENST00000558013 CAMTA1Q9Y6Y1 1673 aa15.25■□□□□ 0.03
LDLR-207ENST00000558013 SASS6Q6UVJ0 657 aa15.25■□□□□ 0.03
LDLR-207ENST00000558013 KBTBD3Q8NAB2 608 aa15.25■□□□□ 0.03
LDLR-207ENST00000558013 BICD2Q8TD16 824 aa15.25■□□□□ 0.03
LDLR-207ENST00000558013 CTDNEP1O95476 244 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 TERF1P54274 439 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 HSP90AB3PQ58FF7 597 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 VSIG10Q8N0Z9 540 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 PAG1Q9NWQ8 432 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 NRBP1Q9UHY1 535 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 TMEM94Q12767 1356 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 MRC1P22897 1456 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 SCN11AQ9UI33 1791 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 H3BQV1 296 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 RESTQ13127 1097 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 IFFO2Q5TF58 517 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 ALDH8A1Q9H2A2 487 aaPredicted RBP15.24■□□□□ 0.03
LDLR-207ENST00000558013 CBX8Q9HC52 389 aa15.24■□□□□ 0.03
LDLR-207ENST00000558013 H7C1W4 665 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 ERCC4Q92889 916 aaPredicted RBP15.23■□□□□ 0.03
LDLR-207ENST00000558013 SCAND2PQ9GZW5 306 aaPredicted RBP15.23■□□□□ 0.03
LDLR-207ENST00000558013 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.23■□□□□ 0.03
LDLR-207ENST00000558013 U3KPZ7 1027 aaPredicted RBP15.23■□□□□ 0.03
LDLR-207ENST00000558013 ELP1O95163 1332 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 FAM200AQ8TCP9 573 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 PDCL3Q9H2J4 239 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 PTGS1P23219 599 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 RAB11FIP4Q86YS3 637 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 DNAJC25Q9H1X3 360 aa15.23■□□□□ 0.03
LDLR-207ENST00000558013 LRMPQ12912 555 aa15.22■□□□□ 0.03
LDLR-207ENST00000558013 KRT32Q14532 448 aa15.22■□□□□ 0.03
LDLR-207ENST00000558013 HAND2P61296 217 aa15.22■□□□□ 0.03
LDLR-207ENST00000558013 FKBP4Q02790 459 aaKnown RBP eCLIP15.22■□□□□ 0.03
LDLR-207ENST00000558013 HSPD1P10809 573 aaKnown RBP15.21■□□□□ 0.03
LDLR-207ENST00000558013 PI16Q6UXB8 463 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 SYNE4Q8N205 404 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 NSUN7Q8NE18 718 aaKnown RBP15.21■□□□□ 0.03
LDLR-207ENST00000558013 A0A1B0GUL7 405 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 ADD1P35611 737 aaKnown RBP15.21■□□□□ 0.03
LDLR-207ENST00000558013 OTUD7BQ6GQQ9 843 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 CWC25Q9NXE8 425 aaPredicted RBP15.21■□□□□ 0.03
LDLR-207ENST00000558013 TAOK2Q9UL54 1235 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 MST1RQ04912 1400 aa15.21■□□□□ 0.03
LDLR-207ENST00000558013 M0R2C6 588 aa15.21■□□□□ 0.02
LDLR-207ENST00000558013 ADORA1P30542 326 aa15.21■□□□□ 0.02
LDLR-207ENST00000558013 DHX32Q7L7V1 743 aaKnown RBP15.21■□□□□ 0.02
LDLR-207ENST00000558013 PTPDC1A2A3K4 754 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 E7EWF7 191 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 KIAA1524Q8TCG1 905 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 FBXW7Q969H0 707 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 CLSTN2Q9H4D0 955 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 MAST3O60307 1309 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 ZNF142P52746 1687 aaPredicted RBP15.2■□□□□ 0.02
LDLR-207ENST00000558013 IFIT1P09914 478 aaKnown RBP15.2■□□□□ 0.02
LDLR-207ENST00000558013 OSBP2Q969R2 916 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 GJB4Q9NTQ9 266 aa15.2■□□□□ 0.02
LDLR-207ENST00000558013 AFDNP55196 1824 aaKnown RBP15.2■□□□□ 0.02
LDLR-207ENST00000558013 SCARF1Q14162 830 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 TOM1L2Q6ZVM7 507 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 GOLPH3LQ9H4A5 285 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 CCDC186Q7Z3E2 898 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 ALS2Q96Q42 1657 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 USP28Q96RU2 1077 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 PFKFB2O60825 505 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 EXOSC10Q01780 885 aaKnown RBP15.19■□□□□ 0.02
LDLR-207ENST00000558013 ZMYM1Q5SVZ6 1142 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 SMARCC2Q8TAQ2 1214 aa15.19■□□□□ 0.02
LDLR-207ENST00000558013 SH3TC1Q8TE82 1336 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 EYA2O00167 538 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 ZNF165P49910 485 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 FAM89AQ96GI7 184 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 SPTLC3Q9NUV7 552 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 DYNC1I1O14576 645 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 FOXP2O15409 715 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 ILDR1Q86SU0 546 aaPredicted RBP15.18■□□□□ 0.02
LDLR-207ENST00000558013 ZCRB1Q8TBF4 217 aaKnown RBP15.18■□□□□ 0.02
LDLR-207ENST00000558013 TRIM5Q9C035 493 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 ARFGEF2Q9Y6D5 1785 aa15.18■□□□□ 0.02
LDLR-207ENST00000558013 C11orf57Q6ZUT1 292 aaPredicted RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 DRC7Q8IY82 874 aa15.17■□□□□ 0.02
LDLR-207ENST00000558013 MYRIPQ8NFW9 859 aa15.17■□□□□ 0.02
LDLR-207ENST00000558013 DDX19AQ9NUU7 478 aaKnown RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 PDIA3P30101 505 aaKnown RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 PRDM11Q9NQV5 511 aa15.17■□□□□ 0.02
LDLR-207ENST00000558013 DENND2AQ9ULE3 1009 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms