RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 ZAP70P43403 619 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 ATP2B3Q16720 1220 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 SRP68Q9UHB9 627 aaKnown RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 TNS2Q63HR2 1409 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 TOGARAM1Q9Y4F4 1720 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 SLC27A2O14975 620 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 GNPATO15228 680 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 APPP05067 770 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 IL6STP40189 918 aaPredicted RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 PLCB2Q00722 1185 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 TTLL5Q6EMB2 1281 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 RAB11FIP4Q86YS3 637 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 HAUS7Q99871 368 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 USP42Q9H9J4 1324 aaKnown RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 ARFGEF2Q9Y6D5 1785 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 ABCC6O95255 1503 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 VPS37CA5D8V6 355 aaPredicted RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 DDX11L8A8MPP1 907 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 KDM4AO75164 1064 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 HSPA1LP34931 641 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 EIF5P55010 431 aaKnown RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 ANAPC15P60006 121 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 BLOC1S2Q6QNY1 142 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 FERMT3Q86UX7 667 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 IL27Q8NEV9 243 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 DISP2A7MBM2 1401 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 SH3TC1Q8TE82 1336 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 HIP1O00291 1037 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 VASPP50552 380 aaPredicted RBP7.09□□□□□ -1.27
SYNE2-225ENST00000557060 NECTIN1Q15223 517 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 KBTBD3Q8NAB2 608 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 LINC00116Q8NCU8 138 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 JAG2Q9Y219 1238 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 ZDHHC9Q9Y397 364 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 PHLPP1O60346 1717 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 PHKA1P46020 1223 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 NUCB2P80303 420 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 MCMDC2Q4G0Z9 681 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 RNF20Q5VTR2 975 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 CAVIN1Q6NZI2 390 aaKnown RBP7.09□□□□□ -1.27
SYNE2-225ENST00000557060 MAP4K1Q92918 833 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 UTP14AQ9BVJ6 771 aaKnown RBP7.09□□□□□ -1.27
SYNE2-225ENST00000557060 CDCA7Q9BWT1 371 aaPredicted RBP7.09□□□□□ -1.27
SYNE2-225ENST00000557060 CIZ1Q9ULV3 898 aaPredicted RBP7.09□□□□□ -1.27
SYNE2-225ENST00000557060 LIMCH1Q9UPQ0 1083 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 SMC3Q9UQE7 1217 aa7.09□□□□□ -1.27
SYNE2-225ENST00000557060 COL15A1P39059 1388 aa7.09□□□□□ -1.28
SYNE2-225ENST00000557060 ZNF609O15014 1411 aa7.09□□□□□ -1.28
SYNE2-225ENST00000557060 PDE8AO60658 829 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 USPL1Q5W0Q7 1092 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 AMIGO3Q86WK7 504 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 DDX11Q96FC9 970 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 RBM27Q9P2N5 1060 aaKnown RBP7.08□□□□□ -1.28
SYNE2-225ENST00000557060 THRAP3Q9Y2W1 955 aaKnown RBP7.08□□□□□ -1.28
SYNE2-225ENST00000557060 GLI3P10071 1580 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 COL16A1Q07092 1604 aaPredicted RBP7.08□□□□□ -1.28
SYNE2-225ENST00000557060 CYP21A2P08686 494 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 ME3Q16798 604 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 SLC9C2Q5TAH2 1124 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 PANK2Q9BZ23 570 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 CCNL1Q9UK58 526 aaPredicted RBP7.08□□□□□ -1.28
SYNE2-225ENST00000557060 TPCN1Q9ULQ1 816 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 LTBP4Q8N2S1 1624 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 SHANK3Q9BYB0 1731 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 M0R2C6 588 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 MCAMP43121 646 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 MCM2P49736 904 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 ERFEQ4G0M1 354 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 FAM173BQ6P4H8 233 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 C3orf67Q6ZVT6 689 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 SLC51AQ86UW1 340 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 OSBP2Q969R2 916 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 CWC22Q9HCG8 908 aaKnown RBP7.08□□□□□ -1.28
SYNE2-225ENST00000557060 ABCF2Q9UG63 623 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 AKAP2Q9Y2D5 859 aa7.08□□□□□ -1.28
SYNE2-225ENST00000557060 COL14A1Q05707 1796 aaKnown RBP7.07□□□□□ -1.28
SYNE2-225ENST00000557060 FIBPO43427 364 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 CAMTA2O94983 1202 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 BCAMP50895 628 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 CCT2P78371 535 aaKnown RBP7.07□□□□□ -1.28
SYNE2-225ENST00000557060 TRIM28Q13263 835 aaKnown RBP7.07□□□□□ -1.28
SYNE2-225ENST00000557060 BRF1Q92994 677 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 PUS7LQ9H0K6 701 aaKnown RBP7.07□□□□□ -1.28
SYNE2-225ENST00000557060 RIPOR2Q9Y4F9 1068 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 GOLGA6L3A6NEY3 463 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 PDE8BO95263 885 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 CSF1RP07333 972 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 GJB2P29033 226 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 CCDC102BQ68D86 513 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 ZNF34Q8IZ26 560 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 TTC14Q96N46 770 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 GPHNQ9NQX3 736 aaPredicted RBP7.07□□□□□ -1.28
SYNE2-225ENST00000557060 MAST3O60307 1309 aa7.07□□□□□ -1.28
SYNE2-225ENST00000557060 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 ZPR1O75312 459 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 HSPD1P10809 573 aaKnown RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 TBC1D9BQ66K14 1250 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 NSFL1CQ9UNZ2 370 aaKnown RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 AFF2P51816 1311 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 N4BP2Q86UW6 1770 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms