RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 CDHR2Q9BYE9 1310 aa12.12□□□□□ -0.47
TMEM260-211ENST00000556648 IFIT1P09914 478 aaKnown RBP12.12□□□□□ -0.47
TMEM260-211ENST00000556648 RPS6KB1P23443 525 aa12.12□□□□□ -0.47
TMEM260-211ENST00000556648 TOB2Q14106 344 aaPredicted RBP12.12□□□□□ -0.47
TMEM260-211ENST00000556648 SCARF1Q14162 830 aa12.12□□□□□ -0.47
TMEM260-211ENST00000556648 TAF7LQ5H9L4 462 aa12.12□□□□□ -0.47
TMEM260-211ENST00000556648 LAMA4Q16363 1823 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 CTSWP56202 376 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 IFIT5Q13325 482 aaKnown RBP12.11□□□□□ -0.47
TMEM260-211ENST00000556648 ITPK1Q13572 414 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 INTS5Q6P9B9 1019 aaKnown RBP12.11□□□□□ -0.47
TMEM260-211ENST00000556648 BLOC1S2Q6QNY1 142 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 TTLL11Q8NHH1 800 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 XAGE2Q96GT9 111 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 SMC3Q9UQE7 1217 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 SPATA31A5Q5VU36 1347 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 SPATA31A7Q8IWB4 1347 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 WDR33Q9C0J8 1336 aaKnown RBP12.11□□□□□ -0.47
TMEM260-211ENST00000556648 M0R2C6 588 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 IRS4O14654 1257 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-211ENST00000556648 SYT1P21579 422 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 ITGA6P23229 1130 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 GJB2P29033 226 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 MRE11P49959 708 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 RNF20Q5VTR2 975 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 PI16Q6UXB8 463 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 RREB1Q92766 1687 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 SPEF2Q9C093 1822 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 MAST3O60307 1309 aa12.11□□□□□ -0.47
TMEM260-211ENST00000556648 CYP21A2P08686 494 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 PSMA5P28066 241 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 IL6STP40189 918 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZSCAN23Q3MJ62 389 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 HSP90AB3PQ58FF7 597 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZMYM1Q5SVZ6 1142 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZSCAN31Q96LW9 406 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 HMG20BQ9P0W2 317 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 TRMT112Q9UI30 125 aaKnown RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 NWD2Q9ULI1 1742 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 LRP5O75197 1615 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 GADD45BO75293 160 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZSCAN22P10073 491 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 CRKLP46109 303 aaKnown RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 FKBP4Q02790 459 aaKnown RBP eCLIP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 TSGA10IPQ3SY00 556 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 TTC39AQ5SRH9 613 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 ZNF34Q8IZ26 560 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 SH2B1Q9NRF2 756 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 TMEM63CQ9P1W3 806 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 RIPOR2Q9Y4F9 1068 aa12.1□□□□□ -0.47
TMEM260-211ENST00000556648 U3KPZ7 1027 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-211ENST00000556648 TCHHQ07283 1943 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 MYH14Q7Z406 1995 aaKnown RBP12.09□□□□□ -0.47
TMEM260-211ENST00000556648 FAM177BA6PVY3 158 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 STX6O43752 255 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 ATP6V1AP38606 617 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 METTL24Q5JXM2 366 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 CDCA7Q9BWT1 371 aaPredicted RBP12.09□□□□□ -0.47
TMEM260-211ENST00000556648 CCDC87Q9NVE4 849 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 CNPY2Q9Y2B0 182 aa12.09□□□□□ -0.47
TMEM260-211ENST00000556648 THRAP3Q9Y2W1 955 aaKnown RBP12.09□□□□□ -0.47
TMEM260-211ENST00000556648 LOC102724428A0A0B4J2F2 783 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 ERVV-1B6SEH8 477 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 RNF113AO15541 343 aaKnown RBP12.08□□□□□ -0.48
TMEM260-211ENST00000556648 KCNQ2O43526 872 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 ZAP70P43403 619 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 EIF5P55010 431 aaKnown RBP12.08□□□□□ -0.48
TMEM260-211ENST00000556648 SIK1P57059 783 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 STK3Q13188 491 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 ATP2B3Q16720 1220 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 GORABQ5T7V8 394 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 SUSD4Q5VX71 490 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 LRRC2Q9BYS8 371 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 HELLSQ9NRZ9 838 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 DDX60Q8IY21 1712 aaKnown RBP12.08□□□□□ -0.48
TMEM260-211ENST00000556648 ANKRD18BA2A2Z9 1011 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 F13A1P00488 732 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 HCLS1P14317 486 aaPredicted RBP12.08□□□□□ -0.48
TMEM260-211ENST00000556648 ZNF445P59923 1031 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 LDHAL6AQ6ZMR3 332 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 USP48Q86UV5 1035 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 VGLL2Q8N8G2 317 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.08□□□□□ -0.48
TMEM260-211ENST00000556648 OSBP2Q969R2 916 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 FBXO3Q9UK99 471 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 MTMR6Q9Y217 621 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 AKAP2Q9Y2D5 859 aa12.08□□□□□ -0.48
TMEM260-211ENST00000556648 COL4A1P02462 1669 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 FOXP2O15409 715 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 PDE8AO60658 829 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 CCDC158Q5M9N0 1113 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 NEK1Q96PY6 1258 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 CICQ96RK0 1608 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-211ENST00000556648 AKAP11Q9UKA4 1901 aa12.07□□□□□ -0.48
TMEM260-211ENST00000556648 MYO5AQ9Y4I1 1855 aaKnown RBP12.07□□□□□ -0.48
TMEM260-211ENST00000556648 CAMTA2O94983 1202 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 HSPD1P10809 573 aaKnown RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 TPRNQ4KMQ1 711 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms