RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 ARHGAP31Q2M1Z3 1444 aa9.09□□□□□ -0.95
LINC00643-203ENST00000555518 WWC1Q8IX03 1113 aa9.09□□□□□ -0.95
LINC00643-203ENST00000555518 TNFRSF25Q93038 417 aa9.09□□□□□ -0.95
LINC00643-203ENST00000555518 STRN4Q9NRL3 753 aa9.09□□□□□ -0.95
LINC00643-203ENST00000555518 CLTCL1P53675 1640 aa9.09□□□□□ -0.95
LINC00643-203ENST00000555518 EML1O00423 815 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 NOS2P35228 1153 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 GTF2IP78347 998 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 PSME1Q06323 249 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 GGT6Q6P531 493 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 PSMG3-AS1Q96PY0 264 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 USP3Q9Y6I4 520 aa9.08□□□□□ -0.96
LINC00643-203ENST00000555518 NOS1P29475 1434 aa9.07□□□□□ -0.96
LINC00643-203ENST00000555518 PPP1R15AO75807 674 aaPredicted RBP9.07□□□□□ -0.96
LINC00643-203ENST00000555518 ITGB7P26010 798 aa9.07□□□□□ -0.96
LINC00643-203ENST00000555518 TXLNAP40222 546 aa9.07□□□□□ -0.96
LINC00643-203ENST00000555518 TRIM28Q13263 835 aaKnown RBP9.07□□□□□ -0.96
LINC00643-203ENST00000555518 ANKIB1Q9P2G1 1089 aa9.07□□□□□ -0.96
LINC00643-203ENST00000555518 TONSLQ96HA7 1378 aa9.07□□□□□ -0.96
LINC00643-203ENST00000555518 CCDC144AA2RUR9 1427 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 SPATA31E1Q6ZUB1 1445 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 RSPO4Q2I0M5 234 aaPredicted RBP9.06□□□□□ -0.96
LINC00643-203ENST00000555518 LRRC69Q6ZNQ3 347 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 TRIM50Q86XT4 487 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 ZNF358Q9NW07 568 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 ZNF232Q9UNY5 417 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 CHMP3Q9Y3E7 222 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 PARP3Q9Y6F1 533 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 SYNMO15061 1565 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 UGGT1Q9NYU2 1555 aa9.06□□□□□ -0.96
LINC00643-203ENST00000555518 NEURL4Q96JN8 1562 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 SERTM1A2A2V5 107 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 M0R082 166 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 SKIP12755 728 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 NKAPLQ5M9Q1 402 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 ZNF417Q8TAU3 575 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 ZDHHC1Q8WTX9 485 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 ZNF587Q96SQ5 575 aaPredicted RBP9.05□□□□□ -0.96
LINC00643-203ENST00000555518 PIK3C2BO00750 1634 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 CNTLNQ9NXG0 1405 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 WASHC2CQ9Y4E1 1318 aa9.05□□□□□ -0.96
LINC00643-203ENST00000555518 CLTCQ00610 1675 aaKnown RBP9.04□□□□□ -0.96
LINC00643-203ENST00000555518 C1orf53Q5VUE5 145 aa9.04□□□□□ -0.96
LINC00643-203ENST00000555518 SLC9A9Q8IVB4 645 aa9.04□□□□□ -0.96
LINC00643-203ENST00000555518 PREX1Q8TCU6 1659 aa9.04□□□□□ -0.96
LINC00643-203ENST00000555518 SCO2A0A1W2PP80 73 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 EPHA4P54764 986 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.03□□□□□ -0.96
LINC00643-203ENST00000555518 RHPN1Q8TCX5 695 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 EFCC1Q9HA90 598 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 TPSG1Q9NRR2 321 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 ADGRB3O60242 1522 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 UHRF1BP1Q6BDS2 1440 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 SPATA31D1Q6ZQQ2 1576 aa9.03□□□□□ -0.96
LINC00643-203ENST00000555518 ERVK-7P63135 1459 aa9.02□□□□□ -0.96
LINC00643-203ENST00000555518 MROH2AA6NES4 1674 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 C9orf172C9J069 976 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 ADH7P40394 386 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 ATP1A2P50993 1020 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 KCNQ4P56696 695 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 SPEM2Q0P670 501 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 NBPF8Q3BBV2 869 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 MICALL1Q8N3F8 863 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 GTF3C3Q9Y5Q9 886 aa9.02□□□□□ -0.97
LINC00643-203ENST00000555518 PIK3CDO00329 1044 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 DYRK3O43781 588 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 HIRAP54198 1017 aaPredicted RBP9.01□□□□□ -0.97
LINC00643-203ENST00000555518 PSMA6P60900 246 aaKnown RBP9.01□□□□□ -0.97
LINC00643-203ENST00000555518 NCOA4Q13772 614 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 MCM6Q14566 821 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 C7orf43Q8WVR3 580 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 ALG2Q9H553 416 aa9.01□□□□□ -0.97
LINC00643-203ENST00000555518 CFAP65Q6ZU64 1925 aaKnown RBP9□□□□□ -0.97
LINC00643-203ENST00000555518 SFSWAPQ12872 951 aaKnown RBP9□□□□□ -0.97
LINC00643-203ENST00000555518 MLECQ14165 292 aa9□□□□□ -0.97
LINC00643-203ENST00000555518 HIF1AQ16665 826 aa9□□□□□ -0.97
LINC00643-203ENST00000555518 ALBP02768 609 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 NID1P14543 1247 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 COL9A3Q14050 684 aaPredicted RBP8.99□□□□□ -0.97
LINC00643-203ENST00000555518 SLC30A3Q99726 388 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 BRD7Q9NPI1 651 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 KCNH4Q9UQ05 1017 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 STARD13Q9Y3M8 1113 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 ZMYM3Q14202 1370 aa8.99□□□□□ -0.97
LINC00643-203ENST00000555518 PRAG1Q86YV5 1406 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 ADAMTSL3P82987 1691 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 IFT172Q9UG01 1749 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 USP17L5A8MUK1 530 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 M0R2N6 131 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 LILRB5O75023 590 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 H2AFB1P0C5Y9 115 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 H2AFB2P0C5Z0 115 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 NRG1Q02297 640 aaPredicted RBP8.98□□□□□ -0.97
LINC00643-203ENST00000555518 POTEAQ6S8J7 498 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 CEP63Q96MT8 703 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 ZFP64Q9NPA5 681 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 KIF1BO60333 1816 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 MADDQ8WXG6 1647 aa8.98□□□□□ -0.97
LINC00643-203ENST00000555518 RALGAPBQ86X10 1494 aa8.97□□□□□ -0.97
LINC00643-203ENST00000555518 NRXN1Q9ULB1 1477 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms