RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 METTL24Q5JXM2 366 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 XAGE2Q96GT9 111 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 CNNM1Q9NRU3 951 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 GNPATO15228 680 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 COL9A3Q14050 684 aaPredicted RBP15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 SCARF1Q14162 830 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 PI16Q6UXB8 463 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 MYO5AQ9Y4I1 1855 aaKnown RBP15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 ST18O60284 1047 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 PRPF40BQ6NWY9 871 aaKnown RBP15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 C3orf67Q6ZVT6 689 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 CCDC24Q8N4L8 307 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 RUFY2Q8WXA3 655 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 LARP6Q9BRS8 491 aaKnown RBP15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 GPR108Q9NPR9 543 aa15.4■□□□□ 0.06
VIPAS39-206ENST00000553888 LY75O60449 1722 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 BCL2L12Q9HB09 334 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 CCDC171Q6TFL3 1326 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 USPL1Q5W0Q7 1092 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 TBC1D9BQ66K14 1250 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 ZGPATQ8N5A5 531 aaKnown RBP15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 CHMP5Q9NZZ3 219 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 TAF6LQ9Y6J9 622 aa15.39■□□□□ 0.05
VIPAS39-206ENST00000553888 IFIT1P09914 478 aaKnown RBP15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 PAG1Q9NWQ8 432 aa15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 CNTNAP4Q9C0A0 1308 aa15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 PHF14O94880 888 aa15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 ADCK5Q3MIX3 580 aa15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 ERFEQ4G0M1 354 aa15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 SAMD1Q6SPF0 538 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-206ENST00000553888 ONECUT3O60422 494 aaPredicted RBP15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 FKBP4Q02790 459 aaKnown RBP eCLIP15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 GORABQ5T7V8 394 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 RBM8AQ9Y5S9 174 aaKnown RBP15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 SCN7AQ01118 1682 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 MED23Q9ULK4 1368 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 ANAPC15P60006 121 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 ATP2B3Q16720 1220 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 VGLL2Q8N8G2 317 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 LRRC4BQ9NT99 713 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 AKAP11Q9UKA4 1901 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 LAMB2P55268 1798 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 TAF5LO75529 589 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 PARP10Q53GL7 1025 aa15.37■□□□□ 0.05
VIPAS39-206ENST00000553888 TTC39AQ5SRH9 613 aa15.36■□□□□ 0.05
VIPAS39-206ENST00000553888 HIP1O00291 1037 aa15.36■□□□□ 0.05
VIPAS39-206ENST00000553888 DTNBO60941 627 aa15.36■□□□□ 0.05
VIPAS39-206ENST00000553888 KBTBD3Q8NAB2 608 aa15.36■□□□□ 0.05
VIPAS39-206ENST00000553888 KCNJ4P48050 445 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 PKP1Q13835 747 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 TMX3Q96JJ7 454 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 ZNF652Q9Y2D9 606 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 C4AP0C0L4 1744 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 C4BP0C0L5 1744 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 RPS6KA4O75676 772 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 NECTIN1Q15223 517 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 FBXO3Q9UK99 471 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 AKAP2Q9Y2D5 859 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 LRP5O75197 1615 aa15.35■□□□□ 0.05
VIPAS39-206ENST00000553888 ZAP70P43403 619 aa15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 ARHGEF1Q92888 912 aaKnown RBP15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 MAP4K1Q92918 833 aa15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 ABCC12Q96J65 1359 aa15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 WTIPA6NIX2 430 aaPredicted RBP15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 CASTP20810 708 aaKnown RBP15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 CCDC158Q5M9N0 1113 aa15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 CREB3L3Q68CJ9 461 aa15.34■□□□□ 0.05
VIPAS39-206ENST00000553888 PDE8BO95263 885 aa15.33■□□□□ 0.05
VIPAS39-206ENST00000553888 IL17RAQ96F46 866 aa15.33■□□□□ 0.05
VIPAS39-206ENST00000553888 JAKMIP1Q96N16 626 aaKnown RBP15.33■□□□□ 0.05
VIPAS39-206ENST00000553888 TRIM37O94972 964 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 SSFA2P28290 1259 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 MCAMP43121 646 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 VPS53Q5VIR6 699 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 FAM196AQ6ZSG2 479 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 RTCBQ9Y3I0 505 aaKnown RBP15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 MYH7P12883 1935 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 SLC27A2O14975 620 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 PHKA1P46020 1223 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 CLEC4GQ6UXB4 293 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 TNPO1Q92973 898 aaKnown RBP15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 TCEANC2Q96MN5 208 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 NARFQ9UHQ1 456 aa15.33■□□□□ 0.04
VIPAS39-206ENST00000553888 A0A0G2JLW4 131 aa15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 EPB41L2O43491 1005 aaKnown RBP15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 CCDC152Q4G0S7 254 aa15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 RC3H1Q5TC82 1133 aaKnown RBP15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 MPHOSPH8Q99549 860 aa15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 ZPR1O75312 459 aa15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 AK2P54819 239 aa15.32■□□□□ 0.04
VIPAS39-206ENST00000553888 MCMDC2Q4G0Z9 681 aa15.31■□□□□ 0.04
VIPAS39-206ENST00000553888 TTC14Q96N46 770 aa15.31■□□□□ 0.04
VIPAS39-206ENST00000553888 GTF2E1P29083 439 aaPredicted RBP15.31■□□□□ 0.04
VIPAS39-206ENST00000553888 AK7Q96M32 723 aa15.31■□□□□ 0.04
VIPAS39-206ENST00000553888 M0R2C6 588 aa15.3■□□□□ 0.04
VIPAS39-206ENST00000553888 RAB3GAP1Q15042 981 aa15.3■□□□□ 0.04
VIPAS39-206ENST00000553888 KRT27Q7Z3Y8 459 aa15.3■□□□□ 0.04
VIPAS39-206ENST00000553888 SLC51AQ86UW1 340 aa15.3■□□□□ 0.04
VIPAS39-206ENST00000553888 LARGE1O95461 756 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms