RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 TOPAZ1Q8N9V7 1692 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 MARSP56192 900 aaKnown RBP6.66□□□□□ -1.34
VTI1B-202ENST00000553619 WDR43Q15061 677 aaKnown RBP eCLIP6.66□□□□□ -1.34
VTI1B-202ENST00000553619 NBPF10Q6P3W6 841 aaKnown RBP6.66□□□□□ -1.34
VTI1B-202ENST00000553619 NBPF15Q8N660 670 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 KCNH5Q8NCM2 988 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 GAS2L1Q99501 681 aaPredicted RBP6.66□□□□□ -1.34
VTI1B-202ENST00000553619 GRIP2Q9C0E4 1043 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 MBIPQ9NS73 344 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 DYRK1BQ9Y463 629 aa6.66□□□□□ -1.34
VTI1B-202ENST00000553619 KIF1AQ12756 1690 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 MON2Q7Z3U7 1717 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 TNNT2P45379 298 aaPredicted RBP6.65□□□□□ -1.34
VTI1B-202ENST00000553619 MTHFSP49914 203 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 MAP3K10Q02779 954 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 NME9Q86XW9 330 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 FAM9BQ8IZU0 186 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 GTPBP3Q969Y2 492 aaKnown RBP6.65□□□□□ -1.34
VTI1B-202ENST00000553619 GMCL1Q96IK5 515 aa6.65□□□□□ -1.34
VTI1B-202ENST00000553619 USP31Q70CQ4 1352 aa6.65□□□□□ -1.35
VTI1B-202ENST00000553619 MST1RQ04912 1400 aa6.65□□□□□ -1.35
VTI1B-202ENST00000553619 XIRP1Q702N8 1843 aaKnown RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 KIF20BQ96Q89 1820 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 LOC100996750A0A140TA64 210 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 SPATA31C2B4DYI2 1134 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 SUZ12Q15022 739 aaKnown RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 BRINP3Q76B58 766 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 PNISRQ8TF01 805 aaKnown RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 FBXO41Q8TF61 875 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 CCDC85AQ96PX6 553 aaPredicted RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 CDCA7Q9BWT1 371 aaPredicted RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 KRTAP4-6Q9BYQ5 205 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 AATKQ6ZMQ8 1374 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 ANKRD26Q9UPS8 1709 aa6.64□□□□□ -1.35
VTI1B-202ENST00000553619 MAP2P11137 1827 aaKnown RBP6.64□□□□□ -1.35
VTI1B-202ENST00000553619 SBNO1A3KN83 1393 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 IL2RAP01589 272 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 NEFMP07197 916 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 CENPBP07199 599 aaPredicted RBP6.63□□□□□ -1.35
VTI1B-202ENST00000553619 FOXR1Q6PIV2 292 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 SSH2Q76I76 1423 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 NGEFQ8N5V2 710 aa6.63□□□□□ -1.35
VTI1B-202ENST00000553619 LRRC59Q96AG4 307 aaKnown RBP6.63□□□□□ -1.35
VTI1B-202ENST00000553619 LTBP4Q8N2S1 1624 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 IQSEC2Q5JU85 1478 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 ARHGEF10O15013 1369 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 INSRP06213 1382 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 H7C1W4 665 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 PPM1GO15355 546 aaPredicted RBP6.62□□□□□ -1.35
VTI1B-202ENST00000553619 DIAPH1O60610 1272 aaKnown RBP6.62□□□□□ -1.35
VTI1B-202ENST00000553619 THBS1P07996 1170 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 AMPHP49418 695 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 TAS1R3Q7RTX0 852 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 SCARF2Q96GP6 870 aaPredicted RBP6.62□□□□□ -1.35
VTI1B-202ENST00000553619 TIMMDC1Q9NPL8 285 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 CEP126Q9P2H0 1117 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 POLKQ9UBT6 870 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 TBC1D2BQ9UPU7 963 aa6.62□□□□□ -1.35
VTI1B-202ENST00000553619 DNMT3AQ9Y6K1 912 aaPredicted RBP6.62□□□□□ -1.35
VTI1B-202ENST00000553619 KIF24Q5T7B8 1368 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 SPATA31A3Q5VYP0 1347 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 MYCP01106 439 aaPredicted RBP6.61□□□□□ -1.35
VTI1B-202ENST00000553619 GCP02774 474 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 CCDC184Q52MB2 194 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 GPAT2Q6NUI2 795 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 KANK3Q6NY19 840 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 WWC1Q8IX03 1113 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 CNKSR1Q969H4 720 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 ACDQ96AP0 544 aa6.61□□□□□ -1.35
VTI1B-202ENST00000553619 NUCKS1Q9H1E3 243 aaKnown RBP6.61□□□□□ -1.35
VTI1B-202ENST00000553619 UBAP1LF5GYI3 381 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 GNRH1P01148 92 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 GTF2E1P29083 439 aaPredicted RBP6.6□□□□□ -1.35
VTI1B-202ENST00000553619 PHKA2P46019 1235 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 XPCQ01831 940 aaPredicted RBP6.6□□□□□ -1.35
VTI1B-202ENST00000553619 CENPCQ03188 943 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 WDR44Q5JSH3 913 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 NUTM2GQ5VZR2 741 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 YTHDC1Q96MU7 727 aaKnown RBP6.6□□□□□ -1.35
VTI1B-202ENST00000553619 TRERF1Q96PN7 1200 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 ESYT1Q9BSJ8 1104 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 GPAMQ9HCL2 828 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 HRH3Q9Y5N1 445 aa6.6□□□□□ -1.35
VTI1B-202ENST00000553619 OVOS2A0A0J9YW53 1432 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 OVOS2Q6IE36 1432 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 PNPLA6Q8IY17 1366 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 U2SURPO15042 1029 aaKnown RBP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 STAU1O95793 577 aaKnown RBP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 F11P03951 625 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 U2AF1L5P0DN76 240 aaPredicted RBP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 BCRP11274 1271 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 MX2P20592 715 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 HNRNPUQ00839 825 aaKnown RBP eCLIP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 U2AF1Q01081 240 aaKnown RBP eCLIP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 RRS1Q15050 365 aaKnown RBP6.59□□□□□ -1.35
VTI1B-202ENST00000553619 TSGA10IPQ3SY00 556 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 SLFNL1Q499Z3 407 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 IP6K1Q92551 441 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 RUNDC1Q96C34 613 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 FHDC1Q9C0D6 1143 aaPredicted RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms