RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 USPL1Q5W0Q7 1092 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 PROSER2Q86WR7 435 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-213ENST00000552720 GTF3C6Q969F1 213 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 TNMDQ9H2S6 317 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 C1orf167Q5SNV9 1468 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 ELP1O95163 1332 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 GLI3P10071 1580 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 KIF1AQ12756 1690 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 DYNC1I1O14576 645 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 PDCP20941 246 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 TSGA10IPQ3SY00 556 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 LMBR1LQ6UX01 489 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 TTC5Q8N0Z6 440 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 FTOQ9C0B1 505 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMA1-213ENST00000552720 HMG20BQ9P0W2 317 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 SNRPA1P09661 255 aaKnown RBP8.88□□□□□ -0.99
LIMA1-213ENST00000552720 CASP7P55210 303 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 TIMM10P62072 90 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 SCRN1Q12765 414 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 RABL6Q3YEC7 729 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-213ENST00000552720 IFNL2Q8IZJ0 200 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 FAM200AQ8TCP9 573 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 NEUROD6Q96NK8 337 aa8.88□□□□□ -0.99
LIMA1-213ENST00000552720 ALDH8A1Q9H2A2 487 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-213ENST00000552720 LAMB4A4D0S4 1761 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 TJP1Q07157 1748 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 A0A087WWV3 80 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 GOLGA6L4A6NEF3 574 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 PTGS1P23219 599 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 RESTQ13127 1097 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 CHST3Q7LGC8 479 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 MYRIPQ8NFW9 859 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 BICD2Q8TD16 824 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 ZNF594Q96JF6 807 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-213ENST00000552720 SCAND2PQ9GZW5 306 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-213ENST00000552720 CBX8Q9HC52 389 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 NRBP1Q9UHY1 535 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 ADAMTSL3P82987 1691 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 NBPF26B4DH59 902 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 GOLIM4O00461 696 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 LRMPQ12912 555 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 MCMDC2Q4G0Z9 681 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 NBPF14Q5TI25 921 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 NBPF10Q6P3W6 841 aaKnown RBP8.87□□□□□ -0.99
LIMA1-213ENST00000552720 TTLL7Q6ZT98 887 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 NBPF15Q8N660 670 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 KIAA1524Q8TCG1 905 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 HAUS7Q99871 368 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 ZMYND15Q9H091 742 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 SPTLC3Q9NUV7 552 aa8.87□□□□□ -0.99
LIMA1-213ENST00000552720 LMTK3Q96Q04 1460 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 CTDNEP1O95476 244 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 CCT2P78371 535 aaKnown RBP8.86□□□□□ -0.99
LIMA1-213ENST00000552720 FOXO4P98177 505 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 APOBRQ0VD83 1088 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 FMNL2Q96PY5 1086 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 DNAJC25Q9H1X3 360 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 NCOA5Q9HCD5 579 aaKnown RBP8.86□□□□□ -0.99
LIMA1-213ENST00000552720 NUP188Q5SRE5 1749 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 PKD1L3Q7Z443 1732 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 H3BQV1 296 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 FGD1P98174 961 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 GUCY1B3Q02153 619 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 KRT32Q14532 448 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 LRRC24Q50LG9 513 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 IFFO2Q5TF58 517 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 ATG9AQ7Z3C6 839 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 ZNF710Q8N1W2 664 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 CLSTN2Q9H4D0 955 aa8.86□□□□□ -0.99
LIMA1-213ENST00000552720 U3KPZ7 1027 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-213ENST00000552720 NWD2Q9ULI1 1742 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 SPDYE4A6NLX3 237 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 CABP4P57796 275 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 CCDC186Q7Z3E2 898 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 KBTBD3Q8NAB2 608 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 DCAF5Q96JK2 942 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 NAP1L2Q9ULW6 460 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 ADD1P35611 737 aaKnown RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 TTLL5Q6EMB2 1281 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 RBM43Q6ZSC3 357 aaKnown RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 NSUN7Q8NE18 718 aaKnown RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 PLBD2Q8NHP8 589 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 ERCC4Q92889 916 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 ZBTB3Q9H5J0 574 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 GPHNQ9NQX3 736 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 PAG1Q9NWQ8 432 aa8.85□□□□□ -0.99
LIMA1-213ENST00000552720 MYO5AQ9Y4I1 1855 aaKnown RBP8.85□□□□□ -0.99
LIMA1-213ENST00000552720 STRCP1A6NGW2 1772 aa8.84□□□□□ -0.99
LIMA1-213ENST00000552720 A1BGP04217 495 aa8.84□□□□□ -0.99
LIMA1-213ENST00000552720 SMARCC2Q8TAQ2 1214 aa8.84□□□□□ -0.99
LIMA1-213ENST00000552720 PUS3Q9BZE2 481 aaKnown RBP8.84□□□□□ -0.99
LIMA1-213ENST00000552720 RNF39Q9H2S5 420 aa8.84□□□□□ -0.99
LIMA1-213ENST00000552720 DDX19AQ9NUU7 478 aaKnown RBP8.84□□□□□ -0.99
LIMA1-213ENST00000552720 PTPDC1A2A3K4 754 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 ZNF165P49910 485 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 DRC7Q8IY82 874 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 BBXQ8WY36 941 aaPredicted RBP8.83□□□□□ -1
LIMA1-213ENST00000552720 PRIMPOLQ96LW4 560 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 CCDC85AQ96PX6 553 aaPredicted RBP8.83□□□□□ -1
LIMA1-213ENST00000552720 USP28Q96RU2 1077 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms