RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CACNA1F	O60840	1977 aa		10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	A1BG	P04217	495 aa		10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	GCGR	P47871	477 aa		10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	WDR43	Q15061	677 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	NPM2	Q86SE8	214 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-223	ENST00000545440	PRAMEF22	A3QJZ6	481 aa		10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	DPEP1	P16444	411 aa		10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	TMPO	P42166	694 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	THUMPD2	Q9BTF0	503 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	USP16	Q9Y5T5	823 aa		10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	LAMB2	P55268	1798 aa		10.08	□□□□□ -0.8
SNHG1-223	ENST00000545440	ATP10D	Q9P241	1426 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	SLX4	Q8IY92	1834 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440		A0A0G2JLW4	131 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	CAMTA2	O94983	1202 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	RIPK4	P57078	832 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	RUNDC1	Q96C34	613 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	BABAM1	Q9NWV8	329 aa		10.07	□□□□□ -0.8
SNHG1-223	ENST00000545440	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	APBB1	O00213	710 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	SPTLC1	O15269	473 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	GIGYF1	O75420	1035 aa	Predicted RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	SERPINB2	P05120	415 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	KCNA3	P22001	575 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	EIF4A1	P60842	406 aa	Known RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	TUSC1	Q2TAM9	212 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	TMEM259	Q4ZIN3	620 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	TBC1D9B	Q66K14	1250 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	NBPF10	Q6P3W6	841 aa	Known RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	DZIP3	Q86Y13	1208 aa	Known RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	NBPF15	Q8N660	670 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	MIS18A	Q9NYP9	233 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	PIM2	Q9P1W9	311 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	WWC3	Q9ULE0	1092 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	TBC1D2B	Q9UPU7	963 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	BCS1L	Q9Y276	419 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	ZNF652	Q9Y2D9	606 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	ERBB4	Q15303	1308 aa		10.06	□□□□□ -0.8
SNHG1-223	ENST00000545440	CFH	P08603	1231 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	PIP4K2A	P48426	406 aa	Predicted RBP	10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	CSPP1	Q1MSJ5	1256 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	CLEC4G	Q6UXB4	293 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	CCDC146	Q8IYE0	955 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	PRM3	Q9NNZ6	103 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	TSPYL4	Q9UJ04	414 aa		10.05	□□□□□ -0.8
SNHG1-223	ENST00000545440	CHRNA5	P30532	468 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	PPP4C	P60510	307 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	DALRD3	Q5D0E6	543 aa	Known RBP	10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	BICDL1	Q6ZP65	573 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	CNBD1	Q8NA66	436 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	SETDB2	Q96T68	719 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	ADAMTS8	Q9UP79	889 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	PDZRN3	Q9UPQ7	1066 aa		10.04	□□□□□ -0.8
SNHG1-223	ENST00000545440	MOXD2P	A6NHM9	499 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	RAD21	O60216	631 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	FDX1	P10109	184 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	PRR5L	Q6MZQ0	368 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	ZMYND15	Q9H091	742 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	ZBTB3	Q9H5J0	574 aa		10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	RRP7A	Q9Y3A4	280 aa	Known RBP	10.03	□□□□□ -0.8
SNHG1-223	ENST00000545440	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.02	□□□□□ -0.8
SNHG1-223	ENST00000545440	DDX60	Q8IY21	1712 aa	Known RBP	10.02	□□□□□ -0.8
SNHG1-223	ENST00000545440	RIC1	Q4ADV7	1423 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	HOXA2	O43364	376 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	SLC10A3	P09131	477 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	PDE6B	P35913	854 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	ST5	P78524	1137 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	PRPF38B	Q5VTL8	546 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	WNT2B	Q93097	391 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	BRIP1	Q9BX63	1249 aa		10.02	□□□□□ -0.81
SNHG1-223	ENST00000545440	MYH3	P11055	1940 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	POTEB3	A0JP26	581 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	ERVV-1	B6SEH8	477 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440		H0YIN7	160 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	CHL1	O00533	1208 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	NDUFV2	P19404	249 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	POTEB	Q6S5H4	581 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	KIF6	Q6ZMV9	814 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	C2CD5	Q86YS7	1000 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	BANK1	Q8NDB2	785 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	LIMD1	Q9UGP4	676 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	MAP3K15	Q6ZN16	1313 aa		10.01	□□□□□ -0.81
SNHG1-223	ENST00000545440	SPDYE5	A6NIY4	337 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	NPHP1	O15259	732 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	HOXB7	P09629	217 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	RFC5	P40937	340 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	ARHGAP27	Q6ZUM4	889 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	NBPF5P	Q86XG9	351 aa	Predicted RBP	10	□□□□□ -0.81
SNHG1-223	ENST00000545440	WWC1	Q8IX03	1113 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	TTLL6	Q8N841	843 aa		10	□□□□□ -0.81
SNHG1-223	ENST00000545440	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10	□□□□□ -0.81	4e-44	■■■■■ 26.8
SNHG1-223	ENST00000545440	MYL6B	P14649	208 aa		9.99	□□□□□ -0.81
SNHG1-223	ENST00000545440	CALD1	Q05682	793 aa	Known RBP	9.99	□□□□□ -0.81
SNHG1-223	ENST00000545440	HLF	Q16534	295 aa		9.99	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms