RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 MTFR1Q15390 333 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 LRIT3Q3SXY7 679 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 FMNL2Q96PY5 1086 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 SIN3AQ96ST3 1273 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 DUOX1Q9NRD9 1551 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 ABCC4O15439 1325 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 ECM2O94769 699 aaPredicted RBP10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 FARP2O94887 1054 aaPredicted RBP10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 NF2P35240 595 aa10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 INHBEP58166 350 aa10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 FAM161BQ96MY7 647 aa10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 KCNQ5Q9NR82 932 aa10.55□□□□□ -0.72
CHMP4A-209ENST00000542700 RGL2O15211 777 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 BMP8BP34820 402 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 NEUROD1Q13562 356 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 ARHGEF6Q15052 776 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 ARMC9Q7Z3E5 817 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 NKX2-3Q8TAU0 364 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 GDF15Q99988 308 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 USP16Q9Y5T5 823 aa10.54□□□□□ -0.72
CHMP4A-209ENST00000542700 RIMBP2O15034 1052 aa10.53□□□□□ -0.72
CHMP4A-209ENST00000542700 ECE2O60344 883 aa10.53□□□□□ -0.72
CHMP4A-209ENST00000542700 SP8Q8IXZ3 490 aa10.53□□□□□ -0.72
CHMP4A-209ENST00000542700 MAFAQ8NHW3 353 aaPredicted RBP10.53□□□□□ -0.72
CHMP4A-209ENST00000542700 GPTP24298 496 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 GJA8P48165 433 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 TEFQ10587 303 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 DOK7Q18PE1 504 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 WASHC4Q2M389 1173 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 OTUD7BQ6GQQ9 843 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 TDHQ8IZJ6 230 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 UBN2Q6ZU65 1347 aa10.52□□□□□ -0.73
CHMP4A-209ENST00000542700 KCNQ3O43525 872 aa10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 ZNF280AP59817 542 aaPredicted RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 MTHFSDQ2M296 383 aaKnown RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 LDLRAD1Q5T700 205 aa10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 WNK4Q96J92 1243 aa10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 ZMYND8Q9ULU4 1186 aaPredicted RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 ANGEL1Q9UNK9 670 aaKnown RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 FZD1Q9UP38 647 aa10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 SYNGAP1Q96PV0 1343 aa10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 ZNF646O15015 1829 aaPredicted RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 IBTKQ9P2D0 1353 aaPredicted RBP10.51□□□□□ -0.73
CHMP4A-209ENST00000542700 ZSWIM8A7E2V4 1837 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 NBPF26B4DH59 902 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 BBOX1O75936 387 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 GJB1P08034 283 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 ZBTB48P10074 688 aaPredicted RBP10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 SUSD4Q5VX71 490 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 NBPF10Q6P3W6 841 aaKnown RBP10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 CCER1Q8TC90 406 aaPredicted RBP10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 SLC10A4Q96EP9 437 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 NLRP3Q96P20 1036 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 ARHGAP39Q9C0H5 1083 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 MYOZ2Q9NPC6 264 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 TAF1P21675 1872 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 CACNA1AO00555 2505 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 EYSQ5T1H1 3165 aa10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 DDX60Q8IY21 1712 aaKnown RBP10.5□□□□□ -0.73
CHMP4A-209ENST00000542700 NTSR2O95665 410 aa10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 VIL1P09327 827 aaKnown RBP10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 CCL5P13501 91 aa10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 C7orf61Q8IZ16 206 aa10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 CLMNQ96JQ2 1002 aa10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 RNF208Q9H0X6 261 aa10.49□□□□□ -0.73
CHMP4A-209ENST00000542700 MUC3AQ02505 3323 aa10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 C6orf229H3BNL8 230 aa10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 HMOX1P09601 288 aa10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 MAGEA10P43363 369 aaPredicted RBP10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 NGEFQ8N5V2 710 aa10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 PTPN18Q99952 460 aa10.48□□□□□ -0.73
CHMP4A-209ENST00000542700 SIPA1L3O60292 1781 aaPredicted RBP10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 LAMB1P07942 1786 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 SCN9AQ15858 1988 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 POTEB2H3BUK9 544 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 SYN1P17600 705 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 IL13P35225 146 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 NBPF9Q3BBW0 867 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 TJAP1Q5JTD0 557 aa10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 FAM109BQ6ICB4 259 aaPredicted RBP10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 U2AF1L4Q8WU68 220 aaKnown RBP10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 UBE2OQ9C0C9 1292 aaKnown RBP10.47□□□□□ -0.73
CHMP4A-209ENST00000542700 USP17L8P0C7I0 530 aa10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 GJA5P36382 358 aa10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 GRAPQ13588 217 aa10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 TAF1CQ15572 869 aaPredicted RBP10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 RSBN1LQ6PCB5 846 aaPredicted RBP10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 AGBL3Q8NEM8 1001 aa10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 IL17REQ8NFR9 667 aa10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 GRAPLQ8TC17 118 aaPredicted RBP10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 CDX2Q99626 313 aaPredicted RBP10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 NSFL1CQ9UNZ2 370 aaKnown RBP10.46□□□□□ -0.73
CHMP4A-209ENST00000542700 LRRC37AA6NMS7 1700 aa10.46□□□□□ -0.74
CHMP4A-209ENST00000542700 PRUNE2Q8WUY3 3088 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 ALPK3Q96L96 1907 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 MAP3K15Q6ZN16 1313 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 BTBD11A6QL63 1104 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 SNRPA1P09661 255 aaKnown RBP10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 LACTBP83111 547 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms