RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.01□□□□□ -0.97
VPS53-205ENST00000541903 MYH3P11055 1940 aa9□□□□□ -0.97
VPS53-205ENST00000541903 A0A1B0GUL7 405 aa9□□□□□ -0.97
VPS53-205ENST00000541903 POLRMTO00411 1230 aaKnown RBP9□□□□□ -0.97
VPS53-205ENST00000541903 MFAP1P55081 439 aaKnown RBP9□□□□□ -0.97
VPS53-205ENST00000541903 PUM3Q15397 648 aaKnown RBP9□□□□□ -0.97
VPS53-205ENST00000541903 ATP2B3Q16720 1220 aa9□□□□□ -0.97
VPS53-205ENST00000541903 GORABQ5T7V8 394 aa9□□□□□ -0.97
VPS53-205ENST00000541903 DDX46Q7L014 1031 aaKnown RBP9□□□□□ -0.97
VPS53-205ENST00000541903 CCDC24Q8N4L8 307 aa9□□□□□ -0.97
VPS53-205ENST00000541903 RILPL2Q969X0 211 aa9□□□□□ -0.97
VPS53-205ENST00000541903 RIPOR2Q9Y4F9 1068 aa9□□□□□ -0.97
VPS53-205ENST00000541903 PDE8BO95263 885 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 MMP10P09238 476 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 ATP5JP18859 108 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 ANP32AP39687 249 aaKnown RBP8.99□□□□□ -0.97
VPS53-205ENST00000541903 CCDC158Q5M9N0 1113 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 RPGRQ92834 1020 aaKnown RBP8.99□□□□□ -0.97
VPS53-205ENST00000541903 EVI5LQ96CN4 794 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 PARP3Q9Y6F1 533 aa8.99□□□□□ -0.97
VPS53-205ENST00000541903 TNRC6CQ9HCJ0 1690 aaKnown RBP8.98□□□□□ -0.97
VPS53-205ENST00000541903 MAP4K4O95819 1239 aaPredicted RBP8.98□□□□□ -0.97
VPS53-205ENST00000541903 IFIT1P09914 478 aaKnown RBP8.98□□□□□ -0.97
VPS53-205ENST00000541903 SLC5A1P13866 664 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 TIMM10P62072 90 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 TTC39AQ5SRH9 613 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 MSL1Q68DK7 614 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 VGLL2Q8N8G2 317 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS53-205ENST00000541903 LPIN2Q92539 896 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 CELF1Q92879 486 aaKnown RBP8.98□□□□□ -0.97
VPS53-205ENST00000541903 XAGE2Q96GT9 111 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 BOLA2Q9H3K6 86 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 BSDC1Q9NW68 430 aaPredicted RBP8.98□□□□□ -0.97
VPS53-205ENST00000541903 TUBGCP6Q96RT7 1819 aa8.98□□□□□ -0.97
VPS53-205ENST00000541903 SEC24BO95487 1268 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 ADORA1P30542 326 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 RPS8P62241 208 aaKnown RBP8.97□□□□□ -0.97
VPS53-205ENST00000541903 CHRNDQ07001 517 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 GRAPQ13588 217 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 HELBQ8NG08 1087 aaPredicted RBP8.97□□□□□ -0.97
VPS53-205ENST00000541903 GRAPLQ8TC17 118 aaPredicted RBP8.97□□□□□ -0.97
VPS53-205ENST00000541903 RBM17Q96I25 401 aaKnown RBP8.97□□□□□ -0.97
VPS53-205ENST00000541903 DNAJC2Q99543 621 aaKnown RBP8.97□□□□□ -0.97
VPS53-205ENST00000541903 HAUS7Q99871 368 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 FSD1Q9BTV5 496 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 DIAPH3Q9NSV4 1193 aa8.97□□□□□ -0.97
VPS53-205ENST00000541903 HIP1O00291 1037 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 REC8O95072 547 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 UQCRFS1P1P0C7P4 283 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 CHMLP26374 656 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 KCNJ4P48050 445 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 CRY2Q49AN0 593 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 RUFY2Q8WXA3 655 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 ESYT1Q9BSJ8 1104 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 BRIP1Q9BX63 1249 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 ANKRD2Q9GZV1 360 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 QSER1Q2KHR3 1735 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 RFX7Q2KHR2 1363 aa8.96□□□□□ -0.98
VPS53-205ENST00000541903 TAF5LO75529 589 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 FGFR2P21802 821 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 PDE6BP35913 854 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 ZNF512BQ96KM6 892 aaPredicted RBP8.95□□□□□ -0.98
VPS53-205ENST00000541903 TBC1D32Q96NH3 1257 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 C22orf23Q9BZE7 217 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 PAG1Q9NWQ8 432 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 MINPP1Q9UNW1 487 aa8.95□□□□□ -0.98
VPS53-205ENST00000541903 COL4A1P02462 1669 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 KLRG2A4D1S0 409 aaPredicted RBP8.94□□□□□ -0.98
VPS53-205ENST00000541903 GOLIM4O00461 696 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 HOXA10P31260 410 aaPredicted RBP8.94□□□□□ -0.98
VPS53-205ENST00000541903 UBE4AQ14139 1066 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 LRRFIP1Q32MZ4 808 aaKnown RBP8.94□□□□□ -0.98
VPS53-205ENST00000541903 CCDC102BQ68D86 513 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 TMC4Q7Z404 712 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 SLC16A10Q8TF71 515 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 DDRGK1Q96HY6 314 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 CRAMP1Q96RY5 1269 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 GNL3LQ9NVN8 582 aaKnown RBP8.94□□□□□ -0.98
VPS53-205ENST00000541903 RAD50Q92878 1312 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 NRXN2Q9P2S2 1712 aa8.94□□□□□ -0.98
VPS53-205ENST00000541903 BBOX1O75936 387 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 NPR1P16066 1061 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 MCCP23508 829 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 ARID4AP29374 1257 aaPredicted RBP8.93□□□□□ -0.98
VPS53-205ENST00000541903 PHKA1P46020 1223 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 FKBP4Q02790 459 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS53-205ENST00000541903 CAVIN4Q5BKX8 364 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 CWC27Q6UX04 472 aaKnown RBP8.93□□□□□ -0.98
VPS53-205ENST00000541903 KIAA1211Q6ZU35 1233 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 TICAM2Q86XR7 235 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 KBTBD3Q8NAB2 608 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 EDC3Q96F86 508 aaKnown RBP8.93□□□□□ -0.98
VPS53-205ENST00000541903 XDHP47989 1333 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 ARAP2Q8WZ64 1704 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 SPEF2Q9C093 1822 aa8.93□□□□□ -0.98
VPS53-205ENST00000541903 ZNF804BA4D1E1 1349 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 PPEF1O14829 653 aaPredicted RBP8.92□□□□□ -0.98
VPS53-205ENST00000541903 SGSM2O43147 1006 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 SRGNP10124 158 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms