RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 GRAPLQ8TC17 118 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-206ENST00000535290 CFHR5Q9BXR6 569 aa11.09□□□□□ -0.63
CLIP1-206ENST00000535290 COL3A1P02461 1466 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 ECE2O60344 883 aa11.08□□□□□ -0.64
CLIP1-206ENST00000535290 VIL1P09327 827 aaKnown RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 HSPA5P11021 654 aaKnown RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 PARP10Q53GL7 1025 aa11.08□□□□□ -0.64
CLIP1-206ENST00000535290 DDX46Q7L014 1031 aaKnown RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 RTF1Q92541 710 aaKnown RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 POLLQ9UGP5 575 aa11.08□□□□□ -0.64
CLIP1-206ENST00000535290 NSFL1CQ9UNZ2 370 aaKnown RBP11.08□□□□□ -0.64
CLIP1-206ENST00000535290 C6orf229H3BNL8 230 aa11.07□□□□□ -0.64
CLIP1-206ENST00000535290 ZNF280AP59817 542 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-206ENST00000535290 TAF7Q15545 349 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-206ENST00000535290 CC2D1BQ5T0F9 858 aaKnown RBP11.07□□□□□ -0.64
CLIP1-206ENST00000535290 ARMC5Q96C12 935 aa11.07□□□□□ -0.64
CLIP1-206ENST00000535290 RSPH6AQ9H0K4 717 aa11.07□□□□□ -0.64
CLIP1-206ENST00000535290 HTTP42858 3142 aa11.07□□□□□ -0.64
CLIP1-206ENST00000535290 SREBF2Q12772 1141 aa11.06□□□□□ -0.64
CLIP1-206ENST00000535290 TTLL12Q14166 644 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-206ENST00000535290 PTPN22Q9Y2R2 807 aa11.06□□□□□ -0.64
CLIP1-206ENST00000535290 NUP98P52948 1817 aa11.06□□□□□ -0.64
CLIP1-206ENST00000535290 PAPPA2Q9BXP8 1791 aa11.05□□□□□ -0.64
CLIP1-206ENST00000535290 A0A0C4DFX4 3053 aa11.05□□□□□ -0.64
CLIP1-206ENST00000535290 EIF4G2P78344 907 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLIP1-206ENST00000535290 GPSM2P81274 684 aa11.05□□□□□ -0.64
CLIP1-206ENST00000535290 PTPN12Q05209 780 aaKnown RBP11.05□□□□□ -0.64
CLIP1-206ENST00000535290 CHRDL2Q6WN34 429 aa11.05□□□□□ -0.64
CLIP1-206ENST00000535290 PER1O15534 1290 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-206ENST00000535290 EIF4A1P60842 406 aaKnown RBP11.04□□□□□ -0.64
CLIP1-206ENST00000535290 CAP1Q01518 475 aa11.04□□□□□ -0.64
CLIP1-206ENST00000535290 TMC4Q7Z404 712 aa11.04□□□□□ -0.64
CLIP1-206ENST00000535290 LRP10Q7Z4F1 713 aa11.04□□□□□ -0.64
CLIP1-206ENST00000535290 CELF1Q92879 486 aaKnown RBP11.04□□□□□ -0.64
CLIP1-206ENST00000535290 ZNF428Q96B54 188 aa11.04□□□□□ -0.64
CLIP1-206ENST00000535290 THUMPD2Q9BTF0 503 aaKnown RBP11.04□□□□□ -0.64
CLIP1-206ENST00000535290 RBM27Q9P2N5 1060 aaKnown RBP11.04□□□□□ -0.64
CLIP1-206ENST00000535290 BRCA2P51587 3418 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 ALDH1A1P00352 501 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 CNGB1Q14028 1251 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-206ENST00000535290 SPRYD7Q5W111 196 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 NLRP10Q86W26 655 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 TBC1D16Q8TBP0 767 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 CD99L2Q8TCZ2 262 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 TMEM106CQ9BVX2 250 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 MYOZ2Q9NPC6 264 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 PITPNM2Q9BZ72 1349 aa11.03□□□□□ -0.64
CLIP1-206ENST00000535290 RANBP2P49792 3224 aaKnown RBP11.03□□□□□ -0.64
CLIP1-206ENST00000535290 HTATSF1O43719 755 aaKnown RBP11.02□□□□□ -0.65
CLIP1-206ENST00000535290 USP17L8P0C7I0 530 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 TCIRG1Q13488 830 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 PRKG1Q13976 671 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 NBPF9Q3BBW0 867 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 RSBN1LQ6PCB5 846 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-206ENST00000535290 IFNL1Q8IU54 200 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 AGBL3Q8NEM8 1001 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 ZNF333Q96JL9 665 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 GMLQ99445 158 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 EYA3Q99504 573 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 TRMT112Q9UI30 125 aaKnown RBP11.02□□□□□ -0.65
CLIP1-206ENST00000535290 SH3TC1Q8TE82 1336 aa11.02□□□□□ -0.65
CLIP1-206ENST00000535290 IGF2BP3O00425 579 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLIP1-206ENST00000535290 ANXA1P04083 346 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 PDIA6Q15084 440 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 PROSER3Q2NL68 480 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 LDLRAD1Q5T700 205 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 ERO1AQ96HE7 468 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 ZC3H12CQ9C0D7 883 aaKnown RBP11.01□□□□□ -0.65
CLIP1-206ENST00000535290 EFCC1Q9HA90 598 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 CENPFP49454 3210 aa11.01□□□□□ -0.65
CLIP1-206ENST00000535290 NECTIN2Q92692 538 aa11□□□□□ -0.65
CLIP1-206ENST00000535290 FZD1Q9UP38 647 aa11□□□□□ -0.65
CLIP1-206ENST00000535290 TAF1P21675 1872 aa11□□□□□ -0.65
CLIP1-206ENST00000535290 SCN9AQ15858 1988 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 MANSC4A6NHS7 340 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 G3V3G9 751 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 MYCP01106 439 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 U2AF1L5P0DN76 240 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 NF2P35240 595 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 INHBEP58166 350 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 U2AF1Q01081 240 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 CRHR2Q13324 411 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 SLC4A8Q2Y0W8 1093 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 DCAF8Q5TAQ9 597 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 ARMC9Q7Z3E5 817 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 PNISRQ8TF01 805 aaKnown RBP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-206ENST00000535290 ERBB4Q15303 1308 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 ZNF609O15014 1411 aa10.99□□□□□ -0.65
CLIP1-206ENST00000535290 COL4A1P02462 1669 aa10.98□□□□□ -0.65
CLIP1-206ENST00000535290 LRRC37AA6NMS7 1700 aa10.98□□□□□ -0.65
CLIP1-206ENST00000535290 RBBP6Q7Z6E9 1792 aaKnown RBP10.98□□□□□ -0.65
CLIP1-206ENST00000535290 WTIPA6NIX2 430 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-206ENST00000535290 UFL1O94874 794 aa10.98□□□□□ -0.65
CLIP1-206ENST00000535290 MNX1P50219 401 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-206ENST00000535290 SF3B3Q15393 1217 aaKnown RBP10.98□□□□□ -0.65
CLIP1-206ENST00000535290 PRO3102Q9H379 93 aa10.98□□□□□ -0.65
CLIP1-206ENST00000535290 ANGEL1Q9UNK9 670 aaKnown RBP10.98□□□□□ -0.65
CLIP1-206ENST00000535290 TIMELESSQ9UNS1 1208 aa10.98□□□□□ -0.65
CLIP1-206ENST00000535290 LAMB4A4D0S4 1761 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms