RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 EN2P19622 333 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-212ENST00000528930 PPP2R1AP30153 589 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 PTPN5P54829 565 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 ZNF530Q6P9A1 599 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-212ENST00000528930 CCDC24Q8N4L8 307 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 ZC3H15Q8WU90 426 aaKnown RBP11.35□□□□□ -0.59
SSBP3-212ENST00000528930 JDP2Q8WYK2 163 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 MRC1P22897 1456 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 LAMB1P07942 1786 aa11.35□□□□□ -0.59
SSBP3-212ENST00000528930 VCANP13611 3396 aa11.34□□□□□ -0.59
SSBP3-212ENST00000528930 SPTBN5Q9NRC6 3674 aaKnown RBP11.34□□□□□ -0.59
SSBP3-212ENST00000528930 OLFM4Q6UX06 510 aa11.34□□□□□ -0.59
SSBP3-212ENST00000528930 CDC37L1Q7L3B6 337 aa11.34□□□□□ -0.59
SSBP3-212ENST00000528930 PSMD1Q99460 953 aa11.34□□□□□ -0.59
SSBP3-212ENST00000528930 HSP90AB1P08238 724 aaKnown RBP11.33□□□□□ -0.6
SSBP3-212ENST00000528930 COL9A1P20849 921 aa11.33□□□□□ -0.6
SSBP3-212ENST00000528930 PLA2G5P39877 138 aa11.33□□□□□ -0.6
SSBP3-212ENST00000528930 ZNF157P51786 506 aaPredicted RBP11.33□□□□□ -0.6
SSBP3-212ENST00000528930 TBC1D9BQ66K14 1250 aa11.33□□□□□ -0.6
SSBP3-212ENST00000528930 GPR25O00155 361 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 SOX1O00570 391 aaPredicted RBP11.32□□□□□ -0.6
SSBP3-212ENST00000528930 CYP19A1P11511 503 aaPredicted RBP11.32□□□□□ -0.6
SSBP3-212ENST00000528930 DNAJC10Q8IXB1 793 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 HS6ST3Q8IZP7 471 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 GBA2Q9HCG7 927 aaPredicted RBP11.32□□□□□ -0.6
SSBP3-212ENST00000528930 VPS9D1Q9Y2B5 631 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 ZBTB1Q9Y2K1 713 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 STXBP5LQ9Y2K9 1186 aa11.32□□□□□ -0.6
SSBP3-212ENST00000528930 U2SURPO15042 1029 aaKnown RBP11.31□□□□□ -0.6
SSBP3-212ENST00000528930 DDX10Q13206 875 aaKnown RBP11.31□□□□□ -0.6
SSBP3-212ENST00000528930 MTHFSDQ2M296 383 aaKnown RBP11.31□□□□□ -0.6
SSBP3-212ENST00000528930 ZNF454Q8N9F8 522 aa11.31□□□□□ -0.6
SSBP3-212ENST00000528930 CNBD1Q8NA66 436 aa11.31□□□□□ -0.6
SSBP3-212ENST00000528930 CDHR2Q9BYE9 1310 aa11.31□□□□□ -0.6
SSBP3-212ENST00000528930 A0A1W2PPC1 479 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 TBC1D8O95759 1140 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 HIRAP54198 1017 aaPredicted RBP11.3□□□□□ -0.6
SSBP3-212ENST00000528930 CABP4P57796 275 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 C1orf141Q5JVX7 400 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 RASAL3Q86YV0 1011 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
SSBP3-212ENST00000528930 ARMC5Q96C12 935 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 CFAP53Q96M91 514 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 CFHR5Q9BXR6 569 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 LGR6Q9HBX8 967 aa11.3□□□□□ -0.6
SSBP3-212ENST00000528930 KLRG2A4D1S0 409 aaPredicted RBP11.29□□□□□ -0.6
SSBP3-212ENST00000528930 NPR1P16066 1061 aa11.29□□□□□ -0.6
SSBP3-212ENST00000528930 ZEB1P37275 1124 aaPredicted RBP11.29□□□□□ -0.6
SSBP3-212ENST00000528930 NFATC2IPQ8NCF5 419 aa11.29□□□□□ -0.6
SSBP3-212ENST00000528930 OXER1Q8TDS5 423 aa11.29□□□□□ -0.6
SSBP3-212ENST00000528930 LRCH3Q96II8 777 aa11.29□□□□□ -0.6
SSBP3-212ENST00000528930 RSPH6AQ9H0K4 717 aa11.29□□□□□ -0.6
SSBP3-212ENST00000528930 FKTNO75072 461 aa11.28□□□□□ -0.6
SSBP3-212ENST00000528930 ST5P78524 1137 aa11.28□□□□□ -0.6
SSBP3-212ENST00000528930 DLK2Q6UY11 383 aa11.28□□□□□ -0.6
SSBP3-212ENST00000528930 C2orf69Q8N8R5 385 aa11.28□□□□□ -0.6
SSBP3-212ENST00000528930 ZNF646O15015 1829 aaPredicted RBP11.28□□□□□ -0.6
SSBP3-212ENST00000528930 TTC28Q96AY4 2481 aa11.27□□□□□ -0.61
SSBP3-212ENST00000528930 RNMTO43148 476 aaKnown RBP11.27□□□□□ -0.61
SSBP3-212ENST00000528930 USP48Q86UV5 1035 aa11.27□□□□□ -0.61
SSBP3-212ENST00000528930 TRPM4Q8TD43 1214 aa11.27□□□□□ -0.61
SSBP3-212ENST00000528930 PHACTR3Q96KR7 559 aa11.27□□□□□ -0.61
SSBP3-212ENST00000528930 NUDCQ9Y266 331 aa11.27□□□□□ -0.61
SSBP3-212ENST00000528930 PRKAR2BP31323 418 aa11.26□□□□□ -0.61
SSBP3-212ENST00000528930 EIF5P55010 431 aaKnown RBP11.26□□□□□ -0.61
SSBP3-212ENST00000528930 RALBP1Q15311 655 aa11.26□□□□□ -0.61
SSBP3-212ENST00000528930 SLC52A2Q9HAB3 445 aa11.26□□□□□ -0.61
SSBP3-212ENST00000528930 ZNF609O15014 1411 aa11.26□□□□□ -0.61
SSBP3-212ENST00000528930 U2AF1L5P0DN76 240 aaPredicted RBP11.25□□□□□ -0.61
SSBP3-212ENST00000528930 U2AF1Q01081 240 aaKnown RBP eCLIP11.25□□□□□ -0.61
SSBP3-212ENST00000528930 OTOP1Q7RTM1 612 aa11.25□□□□□ -0.61
SSBP3-212ENST00000528930 IL17REQ8NFR9 667 aa11.25□□□□□ -0.61
SSBP3-212ENST00000528930 GAS2L2Q8NHY3 880 aa11.25□□□□□ -0.61
SSBP3-212ENST00000528930 GMPSP49915 693 aaPredicted RBP11.24□□□□□ -0.61
SSBP3-212ENST00000528930 LARGE2Q8N3Y3 721 aa11.24□□□□□ -0.61
SSBP3-212ENST00000528930 FAM122AQ96E09 287 aa11.24□□□□□ -0.61
SSBP3-212ENST00000528930 RAPGEFL1Q9UHV5 662 aa11.24□□□□□ -0.61
SSBP3-212ENST00000528930 TRIM17Q9Y577 477 aa11.24□□□□□ -0.61
SSBP3-212ENST00000528930 A0A087WZG4 1122 aa11.23□□□□□ -0.61
SSBP3-212ENST00000528930 GNAT3A8MTJ3 354 aa11.23□□□□□ -0.61
SSBP3-212ENST00000528930 TM4SF4P48230 202 aa11.23□□□□□ -0.61
SSBP3-212ENST00000528930 CC2D2BQ6DHV5 1058 aa11.23□□□□□ -0.61
SSBP3-212ENST00000528930 NIM1KQ8IY84 436 aa11.23□□□□□ -0.61
SSBP3-212ENST00000528930 CXCL9Q07325 125 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 SLC39A6Q13433 755 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 KRT26Q7Z3Y9 468 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 DEFB123Q8N688 67 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 CEMIPQ8WUJ3 1361 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 ZNF333Q96JL9 665 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 ALPK3Q96L96 1907 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 SETDB2Q96T68 719 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 R3HDMLQ9H3Y0 253 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 MTMR10Q9NXD2 777 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 PTPN22Q9Y2R2 807 aa11.22□□□□□ -0.61
SSBP3-212ENST00000528930 TAF1P21675 1872 aa11.21□□□□□ -0.61
SSBP3-212ENST00000528930 SIPA1L3O60292 1781 aaPredicted RBP11.21□□□□□ -0.61
SSBP3-212ENST00000528930 MUC3AQ02505 3323 aa11.21□□□□□ -0.61
SSBP3-212ENST00000528930 ADM5C9JUS6 153 aa11.21□□□□□ -0.61
SSBP3-212ENST00000528930 PLEKHF1Q96S99 279 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms