RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 RUFY2Q8WXA3 655 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 GOLPH3LQ9H4A5 285 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 ASXL2Q76L83 1435 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 CDC42BPBQ9Y5S2 1711 aa11.7□□□□□ -0.54
PDGFRB-207ENST00000520579 ARHGEF40Q8TER5 1519 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 RBM5P52756 815 aaKnown RBP eCLIP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 DPCR1Q3MIW9 517 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 HDGFL1Q5TGJ6 251 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 PAIP2Q9BPZ3 127 aaKnown RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 GJB4Q9NTQ9 266 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 C9orf78Q9NZ63 289 aaPredicted RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 DUOX2Q9NRD8 1548 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 KIF1CO43896 1103 aaKnown RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 PDCP20941 246 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 MNAT1P51948 309 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 EIF4A2Q14240 407 aaKnown RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 IRX2Q9BZI1 471 aaPredicted RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 RRP15Q9Y3B9 282 aaKnown RBP11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 NEBLO76041 1014 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 ATP2B1P20020 1258 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 TXLNBQ8N3L3 684 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 AK7Q96M32 723 aa11.69□□□□□ -0.54
PDGFRB-207ENST00000520579 MARCKSP29966 332 aaPredicted RBP11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 USP28Q96RU2 1077 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 OSBPL3Q9H4L5 887 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 LZTFL1Q9NQ48 299 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 ZSCAN31Q96LW9 406 aaPredicted RBP11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 USP44Q9H0E7 712 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 ERBB3P21860 1342 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 N4BP1O75113 896 aaKnown RBP11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 POLD1P28340 1107 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 STK38Q15208 465 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 ARMCX5Q6P1M9 558 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 PDE11AQ9HCR9 933 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 ANO10Q9NW15 660 aa11.68□□□□□ -0.54
PDGFRB-207ENST00000520579 MTHFSDQ2M296 383 aaKnown RBP11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 LONRF3Q496Y0 759 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 NYAP1Q6ZVC0 841 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 SH2B1Q9NRF2 756 aaPredicted RBP11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 ORC3Q9UBD5 711 aaPredicted RBP11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 LRRC7Q96NW7 1537 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 CHL1O00533 1208 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 FBXO31Q5XUX0 539 aaPredicted RBP11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 ARFGAP3Q9NP61 516 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 A0A0D9SFI3 127 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 CAND2O75155 1236 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 AMPHP49418 695 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 IQCB1Q15051 598 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 VPS53Q5VIR6 699 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 Q6ZUG5 572 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 KIF1BPQ96EK5 621 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 PTPRCP08575 1304 aa11.67□□□□□ -0.54
PDGFRB-207ENST00000520579 PPP1R12AO14974 1030 aaPredicted RBP11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 SLC27A2O14975 620 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 NFATC2IPQ8NCF5 419 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 PI4K2BQ8TCG2 481 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 ESF1Q9H501 851 aaKnown RBP11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 PIK3R4Q99570 1358 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 PI4KAP2A4QPH2 592 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 APOBRQ0VD83 1088 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 PI4KAP1Q8N8J0 262 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 CCDC12Q8WUD4 166 aaPredicted RBP11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 LAMC1P11047 1609 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 NSD2O96028 1365 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 ADKP55263 362 aaKnown RBP11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 MICALL1Q8N3F8 863 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 POLD4Q9HCU8 107 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 TLR7Q9NYK1 1049 aaKnown RBP11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 ADAM21Q9UKJ8 722 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 ARHGAP31Q2M1Z3 1444 aa11.66□□□□□ -0.54
PDGFRB-207ENST00000520579 TMEM232C9JQI7 657 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 SYCP1Q15431 976 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 GIMAP7Q8NHV1 300 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 BIN2Q9UBW5 565 aaPredicted RBP11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 CCDC30Q5VVM6 783 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 OTUD6BQ8N6M0 293 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 DPF2Q92785 391 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 ABCA6Q8N139 1617 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 ZNF589Q86UQ0 364 aaPredicted RBP11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 CCDC97Q96F63 343 aaPredicted RBP11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 CPSF2Q9P2I0 782 aaKnown RBP11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 FAN1Q9Y2M0 1017 aa11.65□□□□□ -0.54
PDGFRB-207ENST00000520579 H3BQF6 201 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 GLRX3O76003 335 aaKnown RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 H2AFXP16104 143 aaPredicted RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 ETF1P62495 437 aaKnown RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 PPP2R3AQ06190 1150 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 SPECC1Q5M775 1068 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 DHX40Q8IX18 779 aaKnown RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 DNAAF4Q8WXU2 420 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 WDR24Q96S15 920 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 PARD6BQ9BYG5 372 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 NAT10Q9H0A0 1025 aaKnown RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 PSMA5P28066 241 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 PDE6BP35913 854 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 UBASH3AP57075 661 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 CWF19L2Q2TBE0 894 aaKnown RBP11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 FAM135BQ49AJ0 1406 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 COBLO75128 1261 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms