RNA–Protein interactions for RNA: ENST00000518711.1

SPIDR-208, Transcript of scaffold protein involved in DNA repair, human

TSL 3

Gene SPIDR, Length 621 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-208	ENST00000518711	PPP1R42	Q7Z4L9	355 aa		7.51	□□□□□ -1.21
SPIDR-208	ENST00000518711	NBPF11	Q86T75	865 aa		7.51	□□□□□ -1.21
SPIDR-208	ENST00000518711	PHACTR3	Q96KR7	559 aa		7.51	□□□□□ -1.21
SPIDR-208	ENST00000518711	NLRP3	Q96P20	1036 aa		7.51	□□□□□ -1.21
SPIDR-208	ENST00000518711	RSPH6A	Q9H0K4	717 aa		7.51	□□□□□ -1.21
SPIDR-208	ENST00000518711	COL3A1	P02461	1466 aa	Predicted RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711		H7C1D1	291 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	U2SURP	O15042	1029 aa	Known RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	RPS12	P25398	132 aa	Known RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	GMPS	P49915	693 aa	Predicted RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	HIRA	P54198	1017 aa	Predicted RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	FKBP1B	P68106	108 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	TRIM26	Q12899	539 aa	Predicted RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	FAM109B	Q6ICB4	259 aa	Predicted RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	DLK2	Q6UY11	383 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	GIGYF2	Q6Y7W6	1299 aa	Known RBP	7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	SAMD7	Q7Z3H4	446 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	RASAL3	Q86YV0	1011 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	CFAP53	Q96M91	514 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	CFHR5	Q9BXR6	569 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	R3HDML	Q9H3Y0	253 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	MUC6	Q6W4X9	2439 aa		7.5	□□□□□ -1.21
SPIDR-208	ENST00000518711	COL4A5	P29400	1685 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	PRAMEF22	A3QJZ6	481 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	NTSR2	O95665	410 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	PRKAR2B	P31323	418 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	TM4SF4	P48230	202 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	KIF6	Q6ZMV9	814 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	FAM161B	Q96MY7	647 aa		7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	CNOT7	Q9UIV1	285 aa	Known RBP	7.49	□□□□□ -1.21
SPIDR-208	ENST00000518711	ABCC12	Q96J65	1359 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	POTEB2	H3BUK9	544 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	MYC	P01106	439 aa	Predicted RBP	7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	AOC3	Q16853	763 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	SUSD4	Q5VX71	490 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	DPP8	Q6V1X1	898 aa	Predicted RBP	7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	NUTM1	Q86Y26	1132 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	GDF15	Q99988	308 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	LRFN3	Q9BTN0	628 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	UTP14A	Q9BVJ6	771 aa	Known RBP	7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	BCL2L13	Q9BXK5	485 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	IGSF5	Q9NSI5	407 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	BABAM1	Q9NWV8	329 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	PRUNE2	Q8WUY3	3088 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	NUP98	P52948	1817 aa		7.48	□□□□□ -1.21
SPIDR-208	ENST00000518711	EVI5	O60447	810 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	PIP4K2A	P48426	406 aa	Predicted RBP	7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	MMP14	P50281	582 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	EIF4A1	P60842	406 aa	Known RBP	7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	SLC9C1	Q4G0N8	1177 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	HSP90AB3P	Q58FF7	597 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	KRT26	Q7Z3Y9	468 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	EYS	Q5T1H1	3165 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	UBN2	Q6ZU65	1347 aa		7.47	□□□□□ -1.21
SPIDR-208	ENST00000518711	FAM177B	A6PVY3	158 aa		7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	CC2D1B	Q5T0F9	858 aa	Known RBP	7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	DDX46	Q7L014	1031 aa	Known RBP	7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	MCM10	Q7L590	875 aa		7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	TDH	Q8IZJ6	230 aa		7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	DCPS	Q96C86	337 aa	Known RBP	7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	ERO1A	Q96HE7	468 aa		7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	EFCC1	Q9HA90	598 aa		7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	POLR2A	P24928	1970 aa	Known RBP	7.46	□□□□□ -1.22
SPIDR-208	ENST00000518711	ZNF609	O15014	1411 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	BAHCC1	Q9P281	2608 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	RAD17	O75943	681 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	VIL1	P09327	827 aa	Known RBP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	U2AF1L5	P0DN76	240 aa	Predicted RBP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	U2AF1	Q01081	240 aa	Known RBP eCLIP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	GRAP	Q13588	217 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	TTLL7	Q6ZT98	887 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	LRP10	Q7Z4F1	713 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	UBE2Q1	Q7Z7E8	422 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	MICALL2	Q8IY33	904 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	GRAPL	Q8TC17	118 aa	Predicted RBP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	TRPM4	Q8TD43	1214 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	CDX2	Q99626	313 aa	Predicted RBP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	PNN	Q9H307	717 aa	Known RBP	7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	ABCC4	O15439	1325 aa		7.45	□□□□□ -1.22
SPIDR-208	ENST00000518711	YDJC	A8MPS7	323 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	NEFM	P07197	916 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	HSP90B1	P14625	803 aa	Known RBP	7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	GPT	P24298	496 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	SF3B3	Q15393	1217 aa	Known RBP	7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	WASHC4	Q2M389	1173 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	C3orf67	Q6ZVT6	689 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	SULF1	Q8IWU6	871 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	AGBL3	Q8NEM8	1001 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	SHISA4	Q96DD7	197 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	EYA3	Q99504	573 aa		7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	RRP7A	Q9Y3A4	280 aa	Known RBP	7.44	□□□□□ -1.22
SPIDR-208	ENST00000518711	PSMD14	O00487	310 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	ALDH1A1	P00352	501 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	ZNF280A	P59817	542 aa	Predicted RBP	7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	SREBF2	Q12772	1141 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	TRIM28	Q13263	835 aa	Known RBP	7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	TCIRG1	Q13488	830 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	PDIA6	Q15084	440 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	NLRP10	Q86W26	655 aa		7.43	□□□□□ -1.22
SPIDR-208	ENST00000518711	CD99L2	Q8TCZ2	262 aa		7.43	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms