RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	NFIX	Q14938	502 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	TTF1	Q15361	905 aa	Predicted RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	TTC39A	Q5SRH9	613 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	SYNE4	Q8N205	404 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	PROM2	Q8N271	834 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	RPGR	Q92834	1020 aa	Known RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	ZNF594	Q96JF6	807 aa	Predicted RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	TBC1D32	Q96NH3	1257 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	GNL3L	Q9NVN8	582 aa	Known RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	BSDC1	Q9NW68	430 aa	Predicted RBP	11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	UBR3	Q6ZT12	1888 aa		11.5	□□□□□ -0.57
TPM3-222	ENST00000515609	SERPINB2	P05120	415 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	CHML	P26374	656 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	TM4SF1	P30408	202 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	RBM25	P49756	843 aa	Known RBP	11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	RPS8	P62241	208 aa	Known RBP	11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	LRRC24	Q50LG9	513 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	HAUS7	Q99871	368 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	TMX4	Q9H1E5	349 aa	Predicted RBP	11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	DBNL	Q9UJU6	430 aa	Known RBP	11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	RAD50	Q92878	1312 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	ZNF609	O15014	1411 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	C4A	P0C0L4	1744 aa		11.49	□□□□□ -0.57
TPM3-222	ENST00000515609	IGSF3	O75054	1194 aa		11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	ZFY	P08048	801 aa	Predicted RBP	11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	UBE4A	Q14139	1066 aa		11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	ZSCAN25	Q6NSZ9	544 aa		11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	IPO9	Q96P70	1041 aa	Known RBP	11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	FSD1	Q9BTV5	496 aa		11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	PARP3	Q9Y6F1	533 aa		11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	TNS1	Q9HBL0	1735 aa	Known RBP	11.48	□□□□□ -0.57
TPM3-222	ENST00000515609	PDE6B	P35913	854 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	KCNJ4	P48050	445 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	TIMM10	P62072	90 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	SLC15A2	Q16348	729 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	CAVIN4	Q5BKX8	364 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	TMED8	Q6PL24	325 aa	Predicted RBP	11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	SLC16A10	Q8TF71	515 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	XAGE2	Q96GT9	111 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	RBM17	Q96I25	401 aa	Known RBP	11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	CAMKK2	Q96RR4	588 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	DBNDD2	Q9BQY9	259 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	ESYT1	Q9BSJ8	1104 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	PUS3	Q9BZE2	481 aa	Known RBP	11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	BOLA2	Q9H3K6	86 aa		11.47	□□□□□ -0.57
TPM3-222	ENST00000515609	DDX60	Q8IY21	1712 aa	Known RBP	11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	LRP5	O75197	1615 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	BBOX1	O75936	387 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	ANAPC15	P60006	121 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	TSHZ3	Q63HK5	1081 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	PRR5L	Q6MZQ0	368 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	BRIP1	Q9BX63	1249 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	PAG1	Q9NWQ8	432 aa		11.46	□□□□□ -0.57
TPM3-222	ENST00000515609	SPEF2	Q9C093	1822 aa		11.46	□□□□□ -0.58
TPM3-222	ENST00000515609	SEMA3E	O15041	775 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	ALDH1B1	P30837	517 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	GRAP	Q13588	217 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	VPS37D	Q86XT2	251 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	COL23A1	Q86Y22	540 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	VGLL2	Q8N8G2	317 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	KBTBD3	Q8NAB2	608 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	GRAPL	Q8TC17	118 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	CRAMP1	Q96RY5	1269 aa		11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	DNAJC2	Q99543	621 aa	Known RBP	11.45	□□□□□ -0.58
TPM3-222	ENST00000515609	POLRMT	O00411	1230 aa	Known RBP	11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	ZBTB22	O15209	634 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	SGSM2	O43147	1006 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	SEC24B	O95487	1268 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	HOXA10	P31260	410 aa	Predicted RBP	11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	EN1	Q05925	392 aa	Predicted RBP	11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	CHRND	Q07001	517 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	ZNF827	Q17R98	1081 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	CRY2	Q49AN0	593 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	RNF20	Q5VTR2	975 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	ANO2	Q9NQ90	1003 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	SEC31B	Q9NQW1	1179 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	TLR7	Q9NYK1	1049 aa	Known RBP	11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	LEMD3	Q9Y2U8	911 aa		11.44	□□□□□ -0.58
TPM3-222	ENST00000515609	AK9	Q5TCS8	1911 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	KLRG2	A4D1S0	409 aa	Predicted RBP	11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	FGFR2	P21802	821 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	RABEP1	Q15276	862 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	EZH2	Q15910	746 aa	Known RBP	11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	AMIGO3	Q86WK7	504 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	USP26	Q9BXU7	913 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	HELLS	Q9NRZ9	838 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	MINPP1	Q9UNW1	487 aa		11.43	□□□□□ -0.58
TPM3-222	ENST00000515609	PNPLA7	Q6ZV29	1317 aa		11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	GOLIM4	O00461	696 aa		11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	ST18	O60284	1047 aa		11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	MAP4K4	O95819	1239 aa	Predicted RBP	11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	MMP10	P09238	476 aa		11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	NPR1	P16066	1061 aa		11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	ZKSCAN1	P17029	563 aa	Predicted RBP	11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	ARID4A	P29374	1257 aa	Predicted RBP	11.42	□□□□□ -0.58
TPM3-222	ENST00000515609	CCDC102B	Q68D86	513 aa		11.42	□□□□□ -0.58

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