RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 USP25Q9UHP3 1055 aa10.15□□□□□ -0.79
VCAN-208ENST00000512590 ZBBXA8MT70 800 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 MCM2P49736 904 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 EPSTI1Q96J88 318 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 FTOQ9C0B1 505 aaKnown RBP eCLIP10.14□□□□□ -0.79
VCAN-208ENST00000512590 SHTN1A0MZ66 631 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 RYBPQ8N488 228 aaPredicted RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 ARHGEF10LQ9HCE6 1279 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 PTPDC1A2A3K4 754 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 MVPQ14764 893 aaKnown RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 IFI16Q16666 785 aaKnown RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 CHST3Q7LGC8 479 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 FAM8A1Q9UBU6 413 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 TMEM110-MUSTN1A8MSY1 372 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 CCER2I3L3R5 266 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 DPYSL4O14531 572 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 SEC24BO95487 1268 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 PLCG2P16885 1265 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 CALML3P27482 149 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 STRN3Q13033 797 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 SKA2Q8WVK7 121 aaPredicted RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 HLTFQ14527 1009 aaKnown RBP eCLIP10.14□□□□□ -0.79
VCAN-208ENST00000512590 ANO6Q4KMQ2 910 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 PPP1R21Q6ZMI0 780 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 LDHAL6AQ6ZMR3 332 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 USP48Q86UV5 1035 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 SPC24Q8NBT2 197 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 NUP88Q99567 741 aaPredicted RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 PAIP2Q9BPZ3 127 aaKnown RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 CCDC94Q9BW85 323 aaPredicted RBP10.14□□□□□ -0.79
VCAN-208ENST00000512590 CARD10Q9BWT7 1032 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 MOSPD1Q9UJG1 213 aa10.14□□□□□ -0.79
VCAN-208ENST00000512590 STX10O60499 249 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 DEKP35659 375 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 FNBP1Q96RU3 617 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 CRACR2AQ9BSW2 395 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 UPF3BQ9BZI7 483 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 GNL1P36915 607 aaPredicted RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 FBF1Q8TES7 1133 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 SRPK1Q96SB4 655 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 NAA15Q9BXJ9 866 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 EXOC1Q9NV70 894 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 NIP7Q9Y221 180 aaKnown RBP eCLIP10.13□□□□□ -0.79
VCAN-208ENST00000512590 ATP2A2P16615 1042 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 KRT85P78386 507 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 CCDC157Q569K6 752 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 CWC27Q6UX04 472 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 FAM204AQ9H8W3 233 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 TERF1P54274 439 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 IFRD2Q12894 506 aaPredicted RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 HEATR3Q7Z4Q2 680 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 PPP2R3CQ969Q6 453 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 JAKMIP1Q96N16 626 aaKnown RBP10.13□□□□□ -0.79
VCAN-208ENST00000512590 TSPY26PQ9H489 355 aa10.13□□□□□ -0.79
VCAN-208ENST00000512590 PPP2R5DQ14738 602 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 CCDC6Q16204 474 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 IFT74Q96LB3 600 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 AS3MTQ9HBK9 375 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 PHF8Q9UPP1 1060 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 MYCLP12524 364 aaPredicted RBP10.12□□□□□ -0.79
VCAN-208ENST00000512590 UBA7P41226 1012 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 CFAP100Q494V2 611 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 WDR44Q5JSH3 913 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 ZNF467Q7Z7K2 595 aaPredicted RBP10.12□□□□□ -0.79
VCAN-208ENST00000512590 RETREG2Q8NC44 543 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 RNF214Q8ND24 703 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 TTLL3Q9Y4R7 772 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 GNPATO15228 680 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 YEATS4O95619 227 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 AP5M1Q9H0R1 490 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 FMNL1O95466 1100 aaPredicted RBP10.12□□□□□ -0.79
VCAN-208ENST00000512590 APOBRQ0VD83 1088 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 DIXDC1Q155Q3 683 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 MFSD6Q6ZSS7 791 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 KCNG4Q8TDN1 519 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 RAD50Q92878 1312 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 PLEKHG3A1L390 1219 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 CCDC192P0DO97 292 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 KIF11P52732 1056 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 KANK3Q6NY19 840 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 L3MBTL2Q969R5 705 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 SMC6Q96SB8 1091 aa10.12□□□□□ -0.79
VCAN-208ENST00000512590 ZSCAN16Q9H4T2 348 aaPredicted RBP10.12□□□□□ -0.79
VCAN-208ENST00000512590 BAZ1AQ9NRL2 1556 aaPredicted RBP10.12□□□□□ -0.79
VCAN-208ENST00000512590 AFAP1L2Q8N4X5 818 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 USHBP1Q8N6Y0 703 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 PIDD1Q9HB75 910 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 STIM2Q9P246 746 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 PPFIA3O75145 1194 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 MAP7Q14244 749 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 ZYXQ15942 572 aaKnown RBP10.11□□□□□ -0.79
VCAN-208ENST00000512590 ELMOD1Q8N336 334 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 MORC4Q8TE76 937 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 C1orf115Q9H7X2 142 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 RNF216Q9NWF9 866 aaPredicted RBP10.11□□□□□ -0.79
VCAN-208ENST00000512590 DKC1O60832 514 aaKnown RBP eCLIP10.11□□□□□ -0.79
VCAN-208ENST00000512590 KRT10P13645 584 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 RNASELQ05823 741 aaKnown RBP10.11□□□□□ -0.79
VCAN-208ENST00000512590 YAF2Q8IY57 180 aa10.11□□□□□ -0.79
VCAN-208ENST00000512590 SLITRK6Q9H5Y7 841 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms