RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 COL4A1P02462 1669 aa12.25□□□□□ -0.45
NUP54-211ENST00000512151 ANKRD36CQ5JPF3 1778 aa12.24□□□□□ -0.45
NUP54-211ENST00000512151 ECE2O60344 883 aa12.24□□□□□ -0.45
NUP54-211ENST00000512151 HCLS1P14317 486 aaPredicted RBP12.24□□□□□ -0.45
NUP54-211ENST00000512151 CAP1Q01518 475 aa12.24□□□□□ -0.45
NUP54-211ENST00000512151 KIF6Q6ZMV9 814 aa12.24□□□□□ -0.45
NUP54-211ENST00000512151 MYL6BP14649 208 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 PRKAR2BP31323 418 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 GRAPQ13588 217 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 WASHC4Q2M389 1173 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 GIGYF2Q6Y7W6 1299 aaKnown RBP12.23□□□□□ -0.45
NUP54-211ENST00000512151 PPP1R42Q7Z4L9 355 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 GRAPLQ8TC17 118 aaPredicted RBP12.23□□□□□ -0.45
NUP54-211ENST00000512151 ARMC5Q96C12 935 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 UTP14AQ9BVJ6 771 aaKnown RBP12.23□□□□□ -0.45
NUP54-211ENST00000512151 POLLQ9UGP5 575 aa12.23□□□□□ -0.45
NUP54-211ENST00000512151 VIL1P09327 827 aaKnown RBP12.22□□□□□ -0.45
NUP54-211ENST00000512151 ZNF280AP59817 542 aaPredicted RBP12.22□□□□□ -0.45
NUP54-211ENST00000512151 CCER1Q8TC90 406 aaPredicted RBP12.22□□□□□ -0.45
NUP54-211ENST00000512151 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
NUP54-211ENST00000512151 PTPN22Q9Y2R2 807 aa12.22□□□□□ -0.45
NUP54-211ENST00000512151 HSPA5P11021 654 aaKnown RBP12.21□□□□□ -0.45
NUP54-211ENST00000512151 GPSM2P81274 684 aa12.21□□□□□ -0.45
NUP54-211ENST00000512151 PARP10Q53GL7 1025 aa12.21□□□□□ -0.45
NUP54-211ENST00000512151 RBM27Q9P2N5 1060 aaKnown RBP12.21□□□□□ -0.45
NUP54-211ENST00000512151 BRCA2P51587 3418 aa12.21□□□□□ -0.45
NUP54-211ENST00000512151 PTPN12Q05209 780 aaKnown RBP12.2□□□□□ -0.46
NUP54-211ENST00000512151 LHX8Q68G74 356 aa12.2□□□□□ -0.46
NUP54-211ENST00000512151 DDX46Q7L014 1031 aaKnown RBP12.2□□□□□ -0.46
NUP54-211ENST00000512151 CD99L2Q8TCZ2 262 aa12.2□□□□□ -0.46
NUP54-211ENST00000512151 ZNF609O15014 1411 aa12.2□□□□□ -0.46
NUP54-211ENST00000512151 KDM3BQ7LBC6 1761 aa12.2□□□□□ -0.46
NUP54-211ENST00000512151 C6orf229H3BNL8 230 aa12.19□□□□□ -0.46
NUP54-211ENST00000512151 NPM3O75607 178 aaKnown RBP12.19□□□□□ -0.46
NUP54-211ENST00000512151 SREBF2Q12772 1141 aa12.19□□□□□ -0.46
NUP54-211ENST00000512151 LRP10Q7Z4F1 713 aa12.19□□□□□ -0.46
NUP54-211ENST00000512151 THUMPD2Q9BTF0 503 aaKnown RBP12.19□□□□□ -0.46
NUP54-211ENST00000512151 NSFL1CQ9UNZ2 370 aaKnown RBP12.19□□□□□ -0.46
NUP54-211ENST00000512151 CENPFP49454 3210 aa12.19□□□□□ -0.46
NUP54-211ENST00000512151 DDX60Q8IY21 1712 aaKnown RBP12.19□□□□□ -0.46
NUP54-211ENST00000512151 A0A0C4DFX4 3053 aa12.19□□□□□ -0.46
NUP54-211ENST00000512151 TTLL12Q14166 644 aaPredicted RBP12.18□□□□□ -0.46
NUP54-211ENST00000512151 TAF7Q15545 349 aaPredicted RBP12.18□□□□□ -0.46
NUP54-211ENST00000512151 CC2D1BQ5T0F9 858 aaKnown RBP12.18□□□□□ -0.46
NUP54-211ENST00000512151 SPRYD7Q5W111 196 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 CELF1Q92879 486 aaKnown RBP12.18□□□□□ -0.46
NUP54-211ENST00000512151 ZNF428Q96B54 188 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 GMLQ99445 158 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 PITPNM2Q9BZ72 1349 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 IGF2BP3O00425 579 aaKnown RBP eCLIP12.18□□□□□ -0.46
NUP54-211ENST00000512151 IFNL1Q8IU54 200 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 RTF1Q92541 710 aaKnown RBP12.18□□□□□ -0.46
NUP54-211ENST00000512151 ZNF333Q96JL9 665 aa12.18□□□□□ -0.46
NUP54-211ENST00000512151 RANBP2P49792 3224 aaKnown RBP12.17□□□□□ -0.46
NUP54-211ENST00000512151 EIF4A1P60842 406 aaKnown RBP12.17□□□□□ -0.46
NUP54-211ENST00000512151 PRKG1Q13976 671 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 RSBN1LQ6PCB5 846 aaPredicted RBP12.17□□□□□ -0.46
NUP54-211ENST00000512151 TMC4Q7Z404 712 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 NLRP10Q86W26 655 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 PIP4P2Q8N4L2 257 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 TBC1D16Q8TBP0 767 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 PRO3102Q9H379 93 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 MYOZ2Q9NPC6 264 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 FZD1Q9UP38 647 aa12.17□□□□□ -0.46
NUP54-211ENST00000512151 SOX1O00570 391 aaPredicted RBP12.16□□□□□ -0.46
NUP54-211ENST00000512151 PER1O15534 1290 aaPredicted RBP12.16□□□□□ -0.46
NUP54-211ENST00000512151 ANXA1P04083 346 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 PDIA6Q15084 440 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 PROSER3Q2NL68 480 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 NBPF9Q3BBW0 867 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 LDLRAD1Q5T700 205 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 AGBL3Q8NEM8 1001 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 TMEM106CQ9BVX2 250 aa12.16□□□□□ -0.46
NUP54-211ENST00000512151 COL6A3P12111 3177 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 CLSPNQ9HAW4 1339 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 ALDH1A1P00352 501 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
NUP54-211ENST00000512151 ERO1AQ96HE7 468 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 EYA3Q99504 573 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 EFCC1Q9HA90 598 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 PSME4Q14997 1843 aa12.15□□□□□ -0.46
NUP54-211ENST00000512151 MYCP01106 439 aaPredicted RBP12.14□□□□□ -0.47
NUP54-211ENST00000512151 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
NUP54-211ENST00000512151 EIF4G2P78344 907 aaKnown RBP eCLIP12.14□□□□□ -0.47
NUP54-211ENST00000512151 CRHR2Q13324 411 aa12.14□□□□□ -0.47
NUP54-211ENST00000512151 TCIRG1Q13488 830 aa12.14□□□□□ -0.47
NUP54-211ENST00000512151 TRMT112Q9UI30 125 aaKnown RBP12.14□□□□□ -0.47
NUP54-211ENST00000512151 PTCH2Q9Y6C5 1203 aa12.14□□□□□ -0.47
NUP54-211ENST00000512151 SH3TC1Q8TE82 1336 aa12.14□□□□□ -0.47
NUP54-211ENST00000512151 WTIPA6NIX2 430 aaPredicted RBP12.13□□□□□ -0.47
NUP54-211ENST00000512151 HTATSF1O43719 755 aaKnown RBP12.13□□□□□ -0.47
NUP54-211ENST00000512151 CNGB1Q14028 1251 aaPredicted RBP12.13□□□□□ -0.47
NUP54-211ENST00000512151 CLMNQ96JQ2 1002 aa12.13□□□□□ -0.47
NUP54-211ENST00000512151 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.13□□□□□ -0.47
NUP54-211ENST00000512151 MANSC4A6NHS7 340 aaPredicted RBP12.12□□□□□ -0.47
NUP54-211ENST00000512151 SLC4A8Q2Y0W8 1093 aa12.12□□□□□ -0.47
NUP54-211ENST00000512151 LRCH3Q96II8 777 aa12.12□□□□□ -0.47
NUP54-211ENST00000512151 MXD3Q9BW11 206 aa12.12□□□□□ -0.47
NUP54-211ENST00000512151 ZC3H12CQ9C0D7 883 aaKnown RBP12.12□□□□□ -0.47
NUP54-211ENST00000512151 LAMB1P07942 1786 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms