RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, human

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-222	ENST00000498810	NUTM1	Q86Y26	1132 aa		13.76	□□□□□ -0.21
CDK11A-222	ENST00000498810	RPGR	Q92834	1020 aa	Known RBP	13.76	□□□□□ -0.21
CDK11A-222	ENST00000498810	EPAS1	Q99814	870 aa		13.76	□□□□□ -0.21
CDK11A-222	ENST00000498810	LAMB2	P55268	1798 aa		13.76	□□□□□ -0.21
CDK11A-222	ENST00000498810	C21orf2	O43822	256 aa		13.75	□□□□□ -0.21
CDK11A-222	ENST00000498810	NPR1	P16066	1061 aa		13.75	□□□□□ -0.21
CDK11A-222	ENST00000498810	PARP10	Q53GL7	1025 aa		13.75	□□□□□ -0.21
CDK11A-222	ENST00000498810	SOGA3	Q5TF21	947 aa		13.75	□□□□□ -0.21
CDK11A-222	ENST00000498810	PRPF40B	Q6NWY9	871 aa	Known RBP	13.75	□□□□□ -0.21
CDK11A-222	ENST00000498810	ABCC12	Q96J65	1359 aa		13.74	□□□□□ -0.21
CDK11A-222	ENST00000498810	UBN2	Q6ZU65	1347 aa		13.74	□□□□□ -0.21
CDK11A-222	ENST00000498810	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK11A-222	ENST00000498810	SRGN	P10124	158 aa		13.74	□□□□□ -0.21
CDK11A-222	ENST00000498810	HYPK	Q9NX55	129 aa		13.74	□□□□□ -0.21
CDK11A-222	ENST00000498810	PPP1R3G	B7ZBB8	358 aa		13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	LMNB1	P20700	586 aa		13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	ERFE	Q4G0M1	354 aa		13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	TSR2	Q969E8	191 aa	Known RBP	13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	UTP14A	Q9BVJ6	771 aa	Known RBP	13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	STK31	Q9BXU1	1019 aa		13.73	□□□□□ -0.21
CDK11A-222	ENST00000498810	CACNA1F	O60840	1977 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	KDM2B	Q8NHM5	1336 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	ZNF853	P0CG23	659 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	ALDH1B1	P30837	517 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	CCDC27	Q2M243	656 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	CCDC93	Q567U6	631 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	CCDC30	Q5VVM6	783 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	SUSD4	Q5VX71	490 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	WWC1	Q8IX03	1113 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	ZNF34	Q8IZ26	560 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	DDX12P	Q92771	950 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	TMX4	Q9H1E5	349 aa	Predicted RBP	13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	TAOK3	Q9H2K8	898 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	RIC1	Q4ADV7	1423 aa		13.72	□□□□□ -0.21
CDK11A-222	ENST00000498810	DDX58	O95786	925 aa	Known RBP	13.71	□□□□□ -0.21
CDK11A-222	ENST00000498810	COL9A1	P20849	921 aa		13.71	□□□□□ -0.21
CDK11A-222	ENST00000498810	RIC3	Q7Z5B4	369 aa		13.71	□□□□□ -0.21
CDK11A-222	ENST00000498810	PLBD2	Q8NHP8	589 aa		13.71	□□□□□ -0.21
CDK11A-222	ENST00000498810	TRMT112	Q9UI30	125 aa	Known RBP	13.71	□□□□□ -0.21
CDK11A-222	ENST00000498810	DDX60	Q8IY21	1712 aa	Known RBP	13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	IL16	Q14005	1332 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	RNF123	Q5XPI4	1314 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	NTSR2	O95665	410 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	C1QTNF8	P60827	252 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	LRP10	Q7Z4F1	713 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	RBM17	Q96I25	401 aa	Known RBP	13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	NLRP3	Q96P20	1036 aa		13.7	□□□□□ -0.22
CDK11A-222	ENST00000498810	SH3TC1	Q8TE82	1336 aa		13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	TCIRG1	Q13488	830 aa		13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	TWISTNB	Q3B726	338 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	C6orf132	Q5T0Z8	1188 aa		13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	C8orf58	Q8NAV2	365 aa		13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	ZNF428	Q96B54	188 aa		13.69	□□□□□ -0.22
CDK11A-222	ENST00000498810	NFKBIE	O00221	500 aa		13.68	□□□□□ -0.22
CDK11A-222	ENST00000498810	NLRP10	Q86W26	655 aa		13.68	□□□□□ -0.22
CDK11A-222	ENST00000498810	MYH3	P11055	1940 aa		13.68	□□□□□ -0.22
CDK11A-222	ENST00000498810	FANCI	Q9NVI1	1328 aa		13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	ATP5J2-PTCD1	G3V325	749 aa		13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	TCERG1	O14776	1098 aa	Known RBP	13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	PPEF1	O14829	653 aa	Predicted RBP	13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	WDR63	Q8IWG1	891 aa		13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	MYH16	Q9H6N6	1097 aa		13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	HCST	Q9UBK5	93 aa		13.67	□□□□□ -0.22
CDK11A-222	ENST00000498810	TAF1	P21675	1872 aa		13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	KLRG2	A4D1S0	409 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	RTL5	Q5HYW3	569 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	RTKN2	Q8IZC4	609 aa		13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	TSPYL6	Q8N831	410 aa		13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	MYD88	Q99836	296 aa		13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	PHAX	Q9H814	394 aa	Known RBP	13.66	□□□□□ -0.22
CDK11A-222	ENST00000498810	LTBP3	Q9NS15	1303 aa		13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	SPEF2	Q9C093	1822 aa		13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	HCLS1	P14317	486 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	NEXN	Q0ZGT2	675 aa		13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	CRY2	Q49AN0	593 aa		13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	DDX46	Q7L014	1031 aa	Known RBP	13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	NMRK2	Q9NPI5	230 aa		13.65	□□□□□ -0.22
CDK11A-222	ENST00000498810	HSP90B1	P14625	803 aa	Known RBP	13.64	□□□□□ -0.23
CDK11A-222	ENST00000498810	PROX2	Q3B8N5	592 aa		13.64	□□□□□ -0.23
CDK11A-222	ENST00000498810	CC2D2B	Q6DHV5	1058 aa		13.64	□□□□□ -0.23
CDK11A-222	ENST00000498810	KCTD12	Q96CX2	325 aa	Known RBP	13.64	□□□□□ -0.23
CDK11A-222	ENST00000498810	ABCC4	O15439	1325 aa		13.64	□□□□□ -0.23
CDK11A-222	ENST00000498810	NBR1	Q14596	966 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	OLFM4	Q6UX06	510 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	FAM89A	Q96GI7	184 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	CRAMP1	Q96RY5	1269 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	RABGEF1	Q9UJ41	708 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	MAP3K2	Q9Y2U5	619 aa		13.63	□□□□□ -0.23
CDK11A-222	ENST00000498810	WDR90	Q96KV7	1748 aa		13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	GLTPD2	A6NH11	291 aa		13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	HOXA10	P31260	410 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	EXOSC9	Q06265	439 aa	Known RBP	13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	FKBP5	Q13451	457 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	GRIPAP1	Q4V328	841 aa		13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	JDP2	Q8WYK2	163 aa		13.62	□□□□□ -0.23
CDK11A-222	ENST00000498810	ISCA1	Q9BUE6	129 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms