RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 LRRFIP1Q32MZ4 808 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 SYNE3Q6ZMZ3 975 aa12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 IPO4Q8TEX9 1081 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-207ENST00000493662 ZNF500O60304 480 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ADORA1P30542 326 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TTLL5Q6EMB2 1281 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 RASSF8Q8NHQ8 419 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 DBNLQ9UJU6 430 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CNPY2Q9Y2B0 182 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 COL3A1P02461 1466 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 GNPATO15228 680 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MCM2P49736 904 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CREB3L3Q68CJ9 461 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TRIM34Q9BYJ4 488 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NCOA5Q9HCD5 579 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 RIMS1Q86UR5 1692 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 IBTKQ9P2D0 1353 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NBPF26B4DH59 902 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SGSM2O43147 1006 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 HOXB7P09629 217 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NBPF14Q5TI25 921 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NBPF10Q6P3W6 841 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MICU3Q86XE3 530 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NBPF15Q8N660 670 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SNX14Q9Y5W7 946 aa12.58□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 GTF2F1P35269 517 aaKnown RBP eCLIP12.57□□□□□ -0.41e-9■■■■□ 25.6
MSH5-SAPCD1-207ENST00000493662 NBPF5PQ86XG9 351 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CKAP2LQ8IYA6 745 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MNS1Q8NEH6 495 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ADCY5O95622 1261 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 POLR3DP05423 398 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ATP2B2Q01814 1243 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 C16orf45Q96MC5 204 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ZKSCAN3Q9BRR0 538 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TMX4Q9H1E5 349 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 PTCH1Q13635 1447 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 WDR33Q9C0J8 1336 aaKnown RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 AKAP17AQ02040 695 aaKnown RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NEK1Q96PY6 1258 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.57□□□□□ -0.45e-11■■■■□ 21.2
MSH5-SAPCD1-207ENST00000493662 GREM2Q9H772 168 aa12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 VIRMAQ69YN4 1812 aaKnown RBP12.57□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ZNF589Q86UQ0 364 aaPredicted RBP12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 EYA2O00167 538 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 IL15P40933 162 aaPredicted RBP12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 APOBRQ0VD83 1088 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 Q6ZUG5 572 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MED14O60244 1454 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ME1P48163 572 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 DNM1Q05193 864 aaKnown RBP12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 KRT222Q8N1A0 295 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 AKAP2Q9Y2D5 859 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ADCY9O60503 1353 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 DLC1Q96QB1 1528 aa12.56□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SHPRHQ149N8 1683 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 STX6O43752 255 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ZAP70P43403 619 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 OTUD7BQ6GQQ9 843 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SNX21Q969T3 373 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 XAGE2Q96GT9 111 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SEC31BQ9NQW1 1179 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TECPR2O15040 1411 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ERICH2A1L162 156 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 F8W031 263 aaPredicted RBP12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 FEZ1Q99689 392 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NAPBQ9H115 298 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ANKARQ7Z5J8 1434 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CCDC171Q6TFL3 1326 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 IMMTQ16891 758 aaKnown RBP12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CPLX2Q6PUV4 134 aaKnown RBP12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SDF4Q9BRK5 362 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CARD10Q9BWT7 1032 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 OGFRQ9NZT2 677 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 KDRP35968 1356 aa12.55□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ZNF213O14771 459 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TNNT1P13805 278 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 RFC4P35249 363 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SETQ01105 290 aaPredicted RBP12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 PRDM4Q9UKN5 801 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 NEURL4Q96JN8 1562 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 RANBP6O60518 1105 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TRIM29Q14134 588 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MCMDC2Q4G0Z9 681 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TFCP2L1Q9NZI6 479 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TCIRG1Q13488 830 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 VPS53Q5VIR6 699 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ISM2Q6H9L7 571 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TEX13AQ9BXU3 409 aaPredicted RBP12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 PTPN12Q05209 780 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 SPATA32Q96LK8 384 aa12.54□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 GOLGA8BA8MQT2 603 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 PRDM1O75626 825 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 DEF6Q9H4E7 631 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 U3KPZ7 1027 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TPM4P67936 248 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 C17orf53Q8N3J3 647 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms