RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 CFHR5Q9BXR6 569 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 GOPCQ9HD26 462 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 PRM3Q9NNZ6 103 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 DDX19BQ9UMR2 479 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 LAS1LQ9Y4W2 734 aaKnown RBP7.36□□□□□ -1.23
VPS41-214ENST00000490924 CAMSAP1Q5T5Y3 1602 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 DLC1Q96QB1 1528 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 ARHGEF28Q8N1W1 1705 aaKnown RBP7.35□□□□□ -1.23
VPS41-214ENST00000490924 SPATA31C2B4DYI2 1134 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 IPO8O15397 1037 aaKnown RBP7.35□□□□□ -1.23
VPS41-214ENST00000490924 GNRH1P01148 92 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 IGHDP01880 384 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 CANXP27824 592 aaKnown RBP7.35□□□□□ -1.23
VPS41-214ENST00000490924 CALD1Q05682 793 aaKnown RBP7.35□□□□□ -1.23
VPS41-214ENST00000490924 ESCO1Q5FWF5 840 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 ZKSCAN2Q63HK3 967 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 SMC5Q8IY18 1101 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 FAM43AQ8N2R8 423 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 ACDQ96AP0 544 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 SPOCK3Q9BQ16 436 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 GRIP2Q9C0E4 1043 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 ANTXR1Q9H6X2 564 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 ARHGEF10LQ9HCE6 1279 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 ANKRD26Q9UPS8 1709 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 CD109Q6YHK3 1445 aa7.35□□□□□ -1.23
VPS41-214ENST00000490924 KIF24Q5T7B8 1368 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 PIK3R4Q99570 1358 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 A0A1B0GTH6 734 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 OIP5O43482 229 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 FBXO45P0C2W1 286 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 IL27Q8NEV9 243 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 ARHGAP45Q92619 1136 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 ZSCAN10Q96SZ4 725 aaPredicted RBP7.34□□□□□ -1.23
VPS41-214ENST00000490924 TERF2IPQ9NYB0 399 aa7.34□□□□□ -1.23
VPS41-214ENST00000490924 ATP7BP35670 1465 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 MTHFSP49914 203 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 LBRQ14739 615 aaKnown RBP7.33□□□□□ -1.24
VPS41-214ENST00000490924 CCDC146Q8IYE0 955 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 DZIP1LQ8IYY4 767 aaKnown RBP7.33□□□□□ -1.24
VPS41-214ENST00000490924 PLEKHF1Q96S99 279 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 GPAMQ9HCL2 828 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 NCOA3Q9Y6Q9 1424 aa7.33□□□□□ -1.24
VPS41-214ENST00000490924 PTPRMP28827 1452 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 K7ELQ4 463 aaPredicted RBP7.32□□□□□ -1.24
VPS41-214ENST00000490924 ADAM23O75077 832 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 BMP4P12644 408 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 RGS3P49796 1198 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 ATF7IPQ6VMQ6 1270 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 GOLGA6L1Q8N7Z2 621 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 CNKSR1Q969H4 720 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 SNX21Q969T3 373 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 TRIM34Q9BYJ4 488 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 COG6Q9Y2V7 657 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 DIP2CQ9Y2E4 1556 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 ARHGEF40Q8TER5 1519 aa7.32□□□□□ -1.24
VPS41-214ENST00000490924 RBM25P49756 843 aaKnown RBP7.31□□□□□ -1.24
VPS41-214ENST00000490924 FBXO31Q5XUX0 539 aaPredicted RBP7.31□□□□□ -1.24
VPS41-214ENST00000490924 FTSJ3Q8IY81 847 aaKnown RBP7.31□□□□□ -1.24
VPS41-214ENST00000490924 PANK1Q8TE04 598 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 FRAT1Q92837 279 aaPredicted RBP7.31□□□□□ -1.24
VPS41-214ENST00000490924 SIRT1Q96EB6 747 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 ESYT1Q9BSJ8 1104 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 SLC12A5Q9H2X9 1139 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 YEATS2Q9ULM3 1422 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 NDUFB9Q9Y6M9 179 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 AGLP35573 1532 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 A0A1W2PP64 1363 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 AATKQ6ZMQ8 1374 aa7.31□□□□□ -1.24
VPS41-214ENST00000490924 PTCH1Q13635 1447 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 FRAT2O75474 233 aaPredicted RBP7.3□□□□□ -1.24
VPS41-214ENST00000490924 TMPOP42166 694 aaKnown RBP7.3□□□□□ -1.24
VPS41-214ENST00000490924 PHKA2P46019 1235 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 CENPCQ03188 943 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 EDARADDQ8WWZ3 215 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 ZBTB40Q9NUA8 1239 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 CHMP5Q9NZZ3 219 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 TMEM131LA2VDJ0 1609 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 CD163L1Q9NR16 1453 aa7.3□□□□□ -1.24
VPS41-214ENST00000490924 YTHDC2Q9H6S0 1430 aaKnown RBP7.29□□□□□ -1.24
VPS41-214ENST00000490924 FSD2A1L4K1 749 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 RLBP1P12271 317 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 BMP2KLQ5H9B9 411 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 FIGNL1Q6PIW4 674 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 CLEC17AQ6ZS10 378 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 GCC1Q96CN9 775 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 RAB6BQ9NRW1 208 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 NOP53Q9NZM5 478 aaKnown RBP7.29□□□□□ -1.24
VPS41-214ENST00000490924 ATXN7L1Q9ULK2 861 aaPredicted RBP7.29□□□□□ -1.24
VPS41-214ENST00000490924 TRAK1Q9UPV9 953 aa7.29□□□□□ -1.24
VPS41-214ENST00000490924 FAM135BQ49AJ0 1406 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 U2AF1L5P0DN76 240 aaPredicted RBP7.28□□□□□ -1.24
VPS41-214ENST00000490924 TRIM27P14373 513 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 DDIT3P35638 169 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 U2AF1Q01081 240 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS41-214ENST00000490924 NUCB1Q02818 461 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 LMOD3Q0VAK6 560 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 USP4Q13107 963 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 GRIN2CQ14957 1233 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 NEUROD2Q15784 382 aa7.28□□□□□ -1.24
VPS41-214ENST00000490924 SKOR2Q2VWA4 1001 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms