RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 AKAP2Q9Y2D5 859 aa26.49■■□□□ 1.83
SMC4-221ENST00000489573 RBM19Q9Y4C8 960 aaKnown RBP26.49■■□□□ 1.83
SMC4-221ENST00000489573 MROH5Q6ZUA9 1318 aa26.48■■□□□ 1.83
SMC4-221ENST00000489573 ANKRD18AQ8IVF6 992 aa26.46■■□□□ 1.83
SMC4-221ENST00000489573 DBNDD2Q9BQY9 259 aa26.46■■□□□ 1.83
SMC4-221ENST00000489573 A0A1B0GUL7 405 aa26.46■■□□□ 1.83
SMC4-221ENST00000489573 VGLL2Q8N8G2 317 aa26.46■■□□□ 1.83
SMC4-221ENST00000489573 TRIM6-TRIM34B2RNG4 842 aa26.45■■□□□ 1.82
SMC4-221ENST00000489573 TBC1D9Q6ZT07 1266 aa26.45■■□□□ 1.82
SMC4-221ENST00000489573 NEUROD6Q96NK8 337 aa26.45■■□□□ 1.82
SMC4-221ENST00000489573 COL4A1P02462 1669 aa26.44■■□□□ 1.82
SMC4-221ENST00000489573 TIMM10P62072 90 aa26.44■■□□□ 1.82
SMC4-221ENST00000489573 SPEF2Q9C093 1822 aa26.43■■□□□ 1.82
SMC4-221ENST00000489573 ATP2B3Q16720 1220 aa26.43■■□□□ 1.82
SMC4-221ENST00000489573 RILPL2Q969X0 211 aa26.43■■□□□ 1.82
SMC4-221ENST00000489573 NRXN2Q9P2S2 1712 aa26.43■■□□□ 1.82
SMC4-221ENST00000489573 PDE8BO95263 885 aa26.42■■□□□ 1.82
SMC4-221ENST00000489573 SEC24BO95487 1268 aa26.42■■□□□ 1.82
SMC4-221ENST00000489573 MMP10P09238 476 aa26.42■■□□□ 1.82
SMC4-221ENST00000489573 DDX46Q7L014 1031 aaKnown RBP26.42■■□□□ 1.82
SMC4-221ENST00000489573 ATP5JP18859 108 aa26.41■■□□□ 1.82
SMC4-221ENST00000489573 MSL1Q68DK7 614 aa26.41■■□□□ 1.82
SMC4-221ENST00000489573 CNTROBQ8N137 903 aa26.41■■□□□ 1.82
SMC4-221ENST00000489573 CELF1Q92879 486 aaKnown RBP26.41■■□□□ 1.82
SMC4-221ENST00000489573 BSDC1Q9NW68 430 aaPredicted RBP26.41■■□□□ 1.82
SMC4-221ENST00000489573 PARP3Q9Y6F1 533 aa26.41■■□□□ 1.82
SMC4-221ENST00000489573 CASC1Q6TDU7 716 aa26.41■■□□□ 1.82
SMC4-221ENST00000489573 MAP4K4O95819 1239 aaPredicted RBP26.4■■□□□ 1.82
SMC4-221ENST00000489573 PUM3Q15397 648 aaKnown RBP26.4■■□□□ 1.82
SMC4-221ENST00000489573 RPS8P62241 208 aaKnown RBP26.39■■□□□ 1.82
SMC4-221ENST00000489573 CRY2Q49AN0 593 aa26.39■■□□□ 1.82
SMC4-221ENST00000489573 CHRNDQ07001 517 aa26.38■■□□□ 1.81
SMC4-221ENST00000489573 HELBQ8NG08 1087 aaPredicted RBP26.38■■□□□ 1.81
SMC4-221ENST00000489573 RPGRQ92834 1020 aaKnown RBP26.38■■□□□ 1.81
SMC4-221ENST00000489573 XAGE2Q96GT9 111 aa26.38■■□□□ 1.81
SMC4-221ENST00000489573 BOLA2Q9H3K6 86 aa26.38■■□□□ 1.81
SMC4-221ENST00000489573 ADORA1P30542 326 aa26.37■■□□□ 1.81
SMC4-221ENST00000489573 UPF2Q9HAU5 1272 aaKnown RBP26.37■■□□□ 1.81
SMC4-221ENST00000489573 EIF5BO60841 1220 aaKnown RBP26.37■■□□□ 1.81
SMC4-221ENST00000489573 FGFR2P21802 821 aa26.37■■□□□ 1.81
SMC4-221ENST00000489573 GORABQ5T7V8 394 aa26.37■■□□□ 1.81
SMC4-221ENST00000489573 LPIN2Q92539 896 aa26.37■■□□□ 1.81
SMC4-221ENST00000489573 EVI5LQ96CN4 794 aa26.37■■□□□ 1.81
SMC4-221ENST00000489573 TAF1P21675 1872 aa26.36■■□□□ 1.81
SMC4-221ENST00000489573 KLRG2A4D1S0 409 aaPredicted RBP26.36■■□□□ 1.81
SMC4-221ENST00000489573 MFAP1P55081 439 aaKnown RBP26.36■■□□□ 1.81
SMC4-221ENST00000489573 GRAPQ13588 217 aa26.36■■□□□ 1.81
SMC4-221ENST00000489573 CCDC158Q5M9N0 1113 aa26.36■■□□□ 1.81
SMC4-221ENST00000489573 GRAPLQ8TC17 118 aaPredicted RBP26.36■■□□□ 1.81
SMC4-221ENST00000489573 BRIP1Q9BX63 1249 aa26.36■■□□□ 1.81
SMC4-221ENST00000489573 SLC5A1P13866 664 aa26.35■■□□□ 1.81
SMC4-221ENST00000489573 ARAP2Q8WZ64 1704 aa26.35■■□□□ 1.81
SMC4-221ENST00000489573 AK9Q5TCS8 1911 aa26.34■■□□□ 1.81
SMC4-221ENST00000489573 TAF5LO75529 589 aa26.34■■□□□ 1.81
SMC4-221ENST00000489573 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.34■■□□□ 1.81
SMC4-221ENST00000489573 RBM17Q96I25 401 aaKnown RBP26.34■■□□□ 1.81
SMC4-221ENST00000489573 HAUS7Q99871 368 aa26.34■■□□□ 1.81
SMC4-221ENST00000489573 MINPP1Q9UNW1 487 aa26.34■■□□□ 1.81
SMC4-221ENST00000489573 A0A1B0GUL6 1792 aa26.34■■□□□ 1.81
SMC4-221ENST00000489573 CHMLP26374 656 aa26.33■■□□□ 1.81
SMC4-221ENST00000489573 TTC39AQ5SRH9 613 aa26.33■■□□□ 1.81
SMC4-221ENST00000489573 ANKRD31Q8N7Z5 1873 aa26.33■■□□□ 1.81
SMC4-221ENST00000489573 IFIT1P09914 478 aaKnown RBP26.32■■□□□ 1.8
SMC4-221ENST00000489573 HOXA10P31260 410 aaPredicted RBP26.31■■□□□ 1.8
SMC4-221ENST00000489573 DNAJC2Q99543 621 aaKnown RBP26.31■■□□□ 1.8
SMC4-221ENST00000489573 SLC16A10Q8TF71 515 aa26.3■■□□□ 1.8
SMC4-221ENST00000489573 PDGFDQ9GZP0 370 aaPredicted RBP26.3■■□□□ 1.8
SMC4-221ENST00000489573 ANKRD2Q9GZV1 360 aa26.3■■□□□ 1.8
SMC4-221ENST00000489573 PDE6BP35913 854 aa26.29■■□□□ 1.8
SMC4-221ENST00000489573 CRAMP1Q96RY5 1269 aa26.29■■□□□ 1.8
SMC4-221ENST00000489573 SNAP23O00161 211 aa26.29■■□□□ 1.8
SMC4-221ENST00000489573 UBE4AQ14139 1066 aa26.29■■□□□ 1.8
SMC4-221ENST00000489573 ZNF512BQ96KM6 892 aaPredicted RBP26.29■■□□□ 1.8
SMC4-221ENST00000489573 ESYT1Q9BSJ8 1104 aa26.28■■□□□ 1.8
SMC4-221ENST00000489573 FSD1Q9BTV5 496 aa26.28■■□□□ 1.8
SMC4-221ENST00000489573 CCDC102BQ68D86 513 aa26.27■■□□□ 1.8
SMC4-221ENST00000489573 EDC3Q96F86 508 aaKnown RBP26.27■■□□□ 1.8
SMC4-221ENST00000489573 TBC1D32Q96NH3 1257 aa26.27■■□□□ 1.8
SMC4-221ENST00000489573 NDUFB9Q9Y6M9 179 aa26.27■■□□□ 1.8
SMC4-221ENST00000489573 RFX7Q2KHR2 1363 aa26.27■■□□□ 1.8
SMC4-221ENST00000489573 HIP1O00291 1037 aa26.26■■□□□ 1.79
SMC4-221ENST00000489573 UQCRFS1P1P0C7P4 283 aa26.26■■□□□ 1.79
SMC4-221ENST00000489573 DIAPH3Q9NSV4 1193 aa26.26■■□□□ 1.79
SMC4-221ENST00000489573 PAG1Q9NWQ8 432 aa26.26■■□□□ 1.79
SMC4-221ENST00000489573 BBOX1O75936 387 aa26.25■■□□□ 1.79
SMC4-221ENST00000489573 NPR1P16066 1061 aa26.25■■□□□ 1.79
SMC4-221ENST00000489573 ARID4AP29374 1257 aaPredicted RBP26.25■■□□□ 1.79
SMC4-221ENST00000489573 PHKA1P46020 1223 aa26.25■■□□□ 1.79
SMC4-221ENST00000489573 GOLIM4O00461 696 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 REC8O95072 547 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 SRGNP10124 158 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 ANP32AP39687 249 aaKnown RBP26.24■■□□□ 1.79
SMC4-221ENST00000489573 KCNJ4P48050 445 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 C22orf23Q9BZE7 217 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 SCARF1Q14162 830 aa26.24■■□□□ 1.79
SMC4-221ENST00000489573 COL11A2P13942 1736 aaPredicted RBP26.23■■□□□ 1.79
SMC4-221ENST00000489573 TMC4Q7Z404 712 aa26.23■■□□□ 1.79
SMC4-221ENST00000489573 KBTBD3Q8NAB2 608 aa26.23■■□□□ 1.79
SMC4-221ENST00000489573 MCAMP43121 646 aa26.22■■□□□ 1.79
SMC4-221ENST00000489573 FKBP4Q02790 459 aaKnown RBP eCLIP26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms