RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 ST5P78524 1137 aa14.07□□□□□ -0.16
C9orf3-220ENST00000489318 TSHZ3Q63HK5 1081 aa14.07□□□□□ -0.16
C9orf3-220ENST00000489318 CEP126Q9P2H0 1117 aa14.07□□□□□ -0.16
C9orf3-220ENST00000489318 AKAP2Q9Y2D5 859 aa14.07□□□□□ -0.16
C9orf3-220ENST00000489318 AKAP11Q9UKA4 1901 aa14.06□□□□□ -0.16
C9orf3-220ENST00000489318 A0A1B0GUL7 405 aa14.06□□□□□ -0.16
C9orf3-220ENST00000489318 CDC45O75419 566 aa14.06□□□□□ -0.16
C9orf3-220ENST00000489318 IGHMBP2P38935 993 aaKnown RBP14.06□□□□□ -0.16
C9orf3-220ENST00000489318 CCDC8Q9H0W5 538 aaPredicted RBP14.06□□□□□ -0.16
C9orf3-220ENST00000489318 CNNM1Q9NRU3 951 aa14.06□□□□□ -0.16
C9orf3-220ENST00000489318 PDE8BO95263 885 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 ATP5JP18859 108 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 FGFR2P21802 821 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 METTL24Q5JXM2 366 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 MPHOSPH8Q99549 860 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 DBNDD2Q9BQY9 259 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 BSDC1Q9NW68 430 aaPredicted RBP14.05□□□□□ -0.16
C9orf3-220ENST00000489318 DOCK2Q92608 1830 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 RFX7Q2KHR2 1363 aa14.05□□□□□ -0.16
C9orf3-220ENST00000489318 TBC1D9Q6ZT07 1266 aa14.04□□□□□ -0.16
C9orf3-220ENST00000489318 ANKRD18AQ8IVF6 992 aa14.04□□□□□ -0.16
C9orf3-220ENST00000489318 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.04□□□□□ -0.16
C9orf3-220ENST00000489318 CELF1Q92879 486 aaKnown RBP14.04□□□□□ -0.16
C9orf3-220ENST00000489318 MYH7P12883 1935 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 NPHP1O15259 732 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 MSH5O43196 834 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 MMP10P09238 476 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 HOXA10P31260 410 aaPredicted RBP14.03□□□□□ -0.16
C9orf3-220ENST00000489318 PUM3Q15397 648 aaKnown RBP14.03□□□□□ -0.16
C9orf3-220ENST00000489318 ATP2B3Q16720 1220 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 SLC16A10Q8TF71 515 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 BCL11AQ9H165 835 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 C10orf71Q711Q0 1435 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 KIAA1551Q9HCM1 1747 aa14.03□□□□□ -0.16
C9orf3-220ENST00000489318 MYH13Q9UKX3 1938 aa14.02□□□□□ -0.16
C9orf3-220ENST00000489318 CACNA1SQ13698 1873 aa14.02□□□□□ -0.16
C9orf3-220ENST00000489318 GRAPQ13588 217 aa14.02□□□□□ -0.17
C9orf3-220ENST00000489318 DDX46Q7L014 1031 aaKnown RBP14.02□□□□□ -0.17
C9orf3-220ENST00000489318 CNTROBQ8N137 903 aa14.02□□□□□ -0.17
C9orf3-220ENST00000489318 CCDC24Q8N4L8 307 aa14.02□□□□□ -0.17
C9orf3-220ENST00000489318 GRAPLQ8TC17 118 aaPredicted RBP14.02□□□□□ -0.17
C9orf3-220ENST00000489318 ZNF512BQ96KM6 892 aaPredicted RBP14.02□□□□□ -0.17
C9orf3-220ENST00000489318 BRIP1Q9BX63 1249 aa14.02□□□□□ -0.17
C9orf3-220ENST00000489318 RBM19Q9Y4C8 960 aaKnown RBP14.02□□□□□ -0.17
C9orf3-220ENST00000489318 PARP3Q9Y6F1 533 aa14.02□□□□□ -0.17
C9orf3-220ENST00000489318 EIF5BO60841 1220 aaKnown RBP14.01□□□□□ -0.17
C9orf3-220ENST00000489318 SEC24BO95487 1268 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 TIMM10P62072 90 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 RPS8P62241 208 aaKnown RBP14.01□□□□□ -0.17
C9orf3-220ENST00000489318 CHRNDQ07001 517 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 TICAM2Q86XR7 235 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 LPIN2Q92539 896 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 UPF1Q92900 1129 aaKnown RBP eCLIP14.01□□□□□ -0.17
C9orf3-220ENST00000489318 XAGE2Q96GT9 111 aa14.01□□□□□ -0.17
C9orf3-220ENST00000489318 ZBTB22O15209 634 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 EVI5LQ96CN4 794 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 NEUROD6Q96NK8 337 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 CRAMP1Q96RY5 1269 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 HAUS7Q99871 368 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 MINPP1Q9UNW1 487 aa14□□□□□ -0.17
C9orf3-220ENST00000489318 TRIM6-TRIM34B2RNG4 842 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 SLC5A1P13866 664 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 ADORA1P30542 326 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 UBE4AQ14139 1066 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 MSL1Q68DK7 614 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 CASC1Q6TDU7 716 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 RPGRQ92834 1020 aaKnown RBP13.99□□□□□ -0.17
C9orf3-220ENST00000489318 DUOX1Q9NRD9 1551 aa13.99□□□□□ -0.17
C9orf3-220ENST00000489318 ZNF804BA4D1E1 1349 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 SRGNP10124 158 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 CHMLP26374 656 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 ARID4AP29374 1257 aaPredicted RBP13.98□□□□□ -0.17
C9orf3-220ENST00000489318 PDE6BP35913 854 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 CCDC158Q5M9N0 1113 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 TMC4Q7Z404 712 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 RBM17Q96I25 401 aaKnown RBP13.98□□□□□ -0.17
C9orf3-220ENST00000489318 ANKRD2Q9GZV1 360 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 BOLA2Q9H3K6 86 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 MAST2Q6P0Q8 1798 aa13.98□□□□□ -0.17
C9orf3-220ENST00000489318 IRS2Q9Y4H2 1338 aa13.97□□□□□ -0.17
C9orf3-220ENST00000489318 TAF5LO75529 589 aa13.97□□□□□ -0.17
C9orf3-220ENST00000489318 IFIT1P09914 478 aaKnown RBP13.97□□□□□ -0.17
C9orf3-220ENST00000489318 HELBQ8NG08 1087 aaPredicted RBP13.97□□□□□ -0.17
C9orf3-220ENST00000489318 RILPL2Q969X0 211 aa13.97□□□□□ -0.17
C9orf3-220ENST00000489318 PDGFDQ9GZP0 370 aaPredicted RBP13.97□□□□□ -0.17
C9orf3-220ENST00000489318 BRCA1P38398 1863 aaKnown RBP13.97□□□□□ -0.17
C9orf3-220ENST00000489318 MYO5AQ9Y4I1 1855 aaKnown RBP13.97□□□□□ -0.17
C9orf3-220ENST00000489318 EPB41L2O43491 1005 aaKnown RBP13.96□□□□□ -0.17
C9orf3-220ENST00000489318 BBOX1O75936 387 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 MAP4K4O95819 1239 aaPredicted RBP13.96□□□□□ -0.17
C9orf3-220ENST00000489318 NPR1P16066 1061 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 TTC39AQ5SRH9 613 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 CCDC102BQ68D86 513 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 TBC1D32Q96NH3 1257 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 SNRKQ9NRH2 765 aa13.96□□□□□ -0.17
C9orf3-220ENST00000489318 XDHP47989 1333 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 RAD50Q92878 1312 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 HIP1O00291 1037 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 UQCRFS1P1P0C7P4 283 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 KBTBD3Q8NAB2 608 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms