RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 TAF6LQ9Y6J9 622 aa13.18□□□□□ -0.3
HLA-DMB-260ENST00000477537 ATRNO75882 1429 aa13.18□□□□□ -0.3
HLA-DMB-260ENST00000477537 RPS6KB1P23443 525 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 PRIM1P49642 420 aaKnown RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 COL9A3Q14050 684 aaPredicted RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 ME3Q16798 604 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 ZSCAN23Q3MJ62 389 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 TAF7LQ5H9L4 462 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 USPL1Q5W0Q7 1092 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 DOT1LQ8TEK3 1739 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 PALLDQ8WX93 1383 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 RBM27Q9P2N5 1060 aaKnown RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 TRPC5Q9UL62 973 aaPredicted RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 ZBTB1Q9Y2K1 713 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 ANKRD36CQ5JPF3 1778 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 SH3TC1Q8TE82 1336 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 STX6O43752 255 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 IFIT1P09914 478 aaKnown RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 ZSCAN22P10073 491 aaPredicted RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 SYT1P21579 422 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 TSGA10IPQ3SY00 556 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 HSP90AB3PQ58FF7 597 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 NLRP10Q86W26 655 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 SYNE4Q8N205 404 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 TPCN1Q9ULQ1 816 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 U3KPZ7 1027 aaPredicted RBP13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 TCHHQ07283 1943 aa13.17□□□□□ -0.3
HLA-DMB-260ENST00000477537 CDHR2Q9BYE9 1310 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 CSF1RP07333 972 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 GJB2P29033 226 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 ZNF445P59923 1031 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 ST3GAL1Q11201 340 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 IFIT5Q13325 482 aaKnown RBP13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 NECAB1Q8N987 351 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 TCEANC2Q96MN5 208 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 FBXO3Q9UK99 471 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 NUP98P52948 1817 aa13.16□□□□□ -0.3
HLA-DMB-260ENST00000477537 MBD3O95983 291 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 KRT32Q14532 448 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 ANKRD1Q15327 319 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 SLFNL1Q499Z3 407 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 ALDH8A1Q9H2A2 487 aaPredicted RBP13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 HELLSQ9NRZ9 838 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 NSFL1CQ9UNZ2 370 aaKnown RBP13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 AKAP2Q9Y2D5 859 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 THRAP3Q9Y2W1 955 aaKnown RBP13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 DTNBO60941 627 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 ADORA1P30542 326 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 GORABQ5T7V8 394 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 CDCA7Q9BWT1 371 aaPredicted RBP13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 SPEF2Q9C093 1822 aa13.15□□□□□ -0.3
HLA-DMB-260ENST00000477537 MYH3P11055 1940 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 DDB1Q16531 1140 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 CCDC158Q5M9N0 1113 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 TTC39AQ5SRH9 613 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 ZMYM1Q5SVZ6 1142 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 FAM182BQ5T319 152 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 BARGINQ6ZT62 677 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 XAGE2Q96GT9 111 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 GDPD2Q9HCC8 539 aa13.14□□□□□ -0.31
HLA-DMB-260ENST00000477537 RNF113AO15541 343 aaKnown RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 F13A1P00488 732 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 CTSWP56202 376 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TOB2Q14106 344 aaPredicted RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 ZNF772Q68DY9 489 aaPredicted RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 POTEAQ6S8J7 498 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 USP48Q86UV5 1035 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TICAM2Q86XR7 235 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 DZIP3Q86Y13 1208 aaKnown RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 NEK1Q96PY6 1258 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TMEM63CQ9P1W3 806 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TRMT112Q9UI30 125 aaKnown RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TBC1D2BQ9UPU7 963 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 IRS4O14654 1257 aaPredicted RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 CYP21A2P08686 494 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 ITGA6P23229 1130 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 IL6STP40189 918 aaPredicted RBP13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 TTLL11Q8NHH1 800 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 GREM2Q9H772 168 aa13.13□□□□□ -0.31
HLA-DMB-260ENST00000477537 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 ANKRD18BA2A2Z9 1011 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 ERVV-1B6SEH8 477 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 FKBP4Q02790 459 aaKnown RBP eCLIP13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 METTL24Q5JXM2 366 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 MTMR6Q9Y217 621 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 CNPY2Q9Y2B0 182 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 RIC1Q4ADV7 1423 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 BRWD3Q6RI45 1802 aa13.12□□□□□ -0.31
HLA-DMB-260ENST00000477537 GADD45BO75293 160 aaPredicted RBP13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 NASPP49321 788 aaPredicted RBP13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 FAM43AQ8N2R8 423 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 MARCH10Q8NA82 808 aaPredicted RBP13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 DSCC1Q9BVC3 393 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 RIPOR2Q9Y4F9 1068 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 ATP6V1DQ9Y5K8 247 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 LAMA4Q16363 1823 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 MAST3O60307 1309 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 VPS37CA5D8V6 355 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms