RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TIMM10P62072 90 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 PIP4K2BP78356 416 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 ZKSCAN5Q9Y2L8 839 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 A0A1B0GUL7 405 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17■□□□□ 0.311e-6■■□□□ 12.3
HDAC6-220ENST00000477528 PRC1O43663 620 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 RAB11FIP4Q86YS3 637 aa17■□□□□ 0.31
HDAC6-220ENST00000477528 NPHP4O75161 1426 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 ATP5JP18859 108 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 PPFIBP1Q86W92 1011 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 BCL11BQ9C0K0 894 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 RBSNQ9H1K0 784 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 RANBP6O60518 1105 aaKnown RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 NEMFO60524 1076 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 APOBRQ0VD83 1088 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 CFAP100Q494V2 611 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 CCDC82Q8N4S0 544 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 KBTBD3Q8NAB2 608 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 CTCFLQ8NI51 663 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 EAF2Q96CJ1 260 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 KCNG4Q8TDN1 519 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 DDX17Q92841 729 aaKnown RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 MAGEC2Q9UBF1 373 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 USP31Q70CQ4 1352 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 CDC42BPGQ6DT37 1551 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 MYO3AQ8NEV4 1616 aa16.99■□□□□ 0.31
HDAC6-220ENST00000477528 IRS4O14654 1257 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 SFPQP23246 707 aaKnown RBP eCLIP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 DZIP3Q86Y13 1208 aaKnown RBP16.99■□□□□ 0.31
HDAC6-220ENST00000477528 PTPDC1A2A3K4 754 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 A1BGP04217 495 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 PPLO60437 1756 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 ZBTB43O43298 467 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 SOGA3Q5TF21 947 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 KRT23Q9C075 422 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 STIM1Q13586 685 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 ANO6Q4KMQ2 910 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 CCDC129Q6ZRS4 1044 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 CCDC144CPQ8IYA2 1237 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 CDK5RAP3Q96JB5 506 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 CNNM2Q9H8M5 875 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 PROSER3Q2NL68 480 aa16.98■□□□□ 0.31
HDAC6-220ENST00000477528 UNC5CLQ8IV45 518 aa16.97■□□□□ 0.31
HDAC6-220ENST00000477528 RGS12O14924 1447 aa16.97■□□□□ 0.31
HDAC6-220ENST00000477528 KIF2AO00139 706 aaPredicted RBP16.97■□□□□ 0.31
HDAC6-220ENST00000477528 CATIPQ7Z7H3 387 aa16.97■□□□□ 0.31
HDAC6-220ENST00000477528 CNNM3Q8NE01 707 aa16.97■□□□□ 0.31
HDAC6-220ENST00000477528 ERVV-2B6SEH9 535 aa16.97■□□□□ 0.31
HDAC6-220ENST00000477528 MRPS27Q92552 414 aaKnown RBP16.97■□□□□ 0.31
HDAC6-220ENST00000477528 FAM89AQ96GI7 184 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 SLC26A6Q9BXS9 759 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 ZNF287Q9HBT7 754 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 ATP6V1AP38606 617 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 TYRO3Q06418 890 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 DZIP1Q86YF9 867 aaKnown RBP16.96■□□□□ 0.31
HDAC6-220ENST00000477528 NOC3LQ8WTT2 800 aaKnown RBP16.96■□□□□ 0.31
HDAC6-220ENST00000477528 ALG1Q9BT22 464 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 USP5P45974 858 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 UTP14AQ9BVJ6 771 aaKnown RBP16.96■□□□□ 0.31
HDAC6-220ENST00000477528 PREX1Q8TCU6 1659 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 ERBB4Q15303 1308 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 FRMPD1Q5SYB0 1578 aa16.96■□□□□ 0.31
HDAC6-220ENST00000477528 CHST3Q7LGC8 479 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 LLPHQ9BRT6 129 aaKnown RBP16.95■□□□□ 0.3
HDAC6-220ENST00000477528 PTH1RQ03431 593 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 PKP1Q13835 747 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 ZNF771Q7L3S4 317 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-220ENST00000477528 TMTC2Q8N394 836 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 GSDMDP57764 484 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 PTPN14Q15678 1187 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 ATL3Q6DD88 541 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 PIBF1Q8WXW3 757 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 LSG1Q9H089 658 aaKnown RBP16.95■□□□□ 0.3
HDAC6-220ENST00000477528 POLA2Q14181 598 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 WTAPQ15007 396 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 DDB1Q16531 1140 aa16.95■□□□□ 0.3
HDAC6-220ENST00000477528 ZNF594Q96JF6 807 aaPredicted RBP16.94■□□□□ 0.3
HDAC6-220ENST00000477528 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 MROH1Q8NDA8 1641 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 BIN1O00499 593 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 TEX35Q5T0J7 233 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 SMARCC1Q92922 1105 aaPredicted RBP16.94■□□□□ 0.3
HDAC6-220ENST00000477528 ZSWIM6Q9HCJ5 1215 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 BTG4Q9NY30 223 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 ANKIB1Q9P2G1 1089 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 SLC4A4Q9Y6R1 1079 aa16.94■□□□□ 0.3
HDAC6-220ENST00000477528 ERBB3P21860 1342 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 ANKRD18AQ8IVF6 992 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 XAGE2Q96GT9 111 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 NIP7Q9Y221 180 aaKnown RBP eCLIP16.93■□□□□ 0.3
HDAC6-220ENST00000477528 TMEM63CQ9P1W3 806 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 CCDC102BQ68D86 513 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 A0A0D9SFI3 127 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 CYP7A1P22680 504 aa16.93■□□□□ 0.3
HDAC6-220ENST00000477528 GNAT2P19087 354 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 DNAJC25Q9H1X3 360 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 RRAGDQ9NQL2 400 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-220ENST00000477528 NDUFB9Q9Y6M9 179 aa16.92■□□□□ 0.3
HDAC6-220ENST00000477528 CPS1P31327 1500 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms