RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 XDHP47989 1333 aa15.35■□□□□ 0.05
SYNE1-223ENST00000476519 G3V3G9 751 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 H7C1D1 291 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 CCER2I3L3R5 266 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 UFL1O94874 794 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 ATP2B4P23634 1241 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 RPS12P25398 132 aaKnown RBP15.34■□□□□ 0.05
SYNE1-223ENST00000476519 CASP7P55210 303 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 BEND3Q5T5X7 828 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 DCAF8Q5TAQ9 597 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 DBNDD1Q9H9R9 158 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 PGAP2Q9UHJ9 254 aa15.34■□□□□ 0.05
SYNE1-223ENST00000476519 CNOT7Q9UIV1 285 aaKnown RBP15.34■□□□□ 0.05
SYNE1-223ENST00000476519 IGHMBP2P38935 993 aaKnown RBP15.33■□□□□ 0.04
SYNE1-223ENST00000476519 DOK7Q18PE1 504 aa15.33■□□□□ 0.04
SYNE1-223ENST00000476519 MINPP1Q9UNW1 487 aa15.33■□□□□ 0.04
SYNE1-223ENST00000476519 DDX60Q8IY21 1712 aaKnown RBP15.33■□□□□ 0.04
SYNE1-223ENST00000476519 LAMB2P55268 1798 aa15.32■□□□□ 0.04
SYNE1-223ENST00000476519 F6X3S4 739 aa15.32■□□□□ 0.04
SYNE1-223ENST00000476519 PSMD14O00487 310 aa15.32■□□□□ 0.04
SYNE1-223ENST00000476519 ECE2O60344 883 aa15.32■□□□□ 0.04
SYNE1-223ENST00000476519 ALDH1L1O75891 902 aa15.31■□□□□ 0.04
SYNE1-223ENST00000476519 VIL1P09327 827 aaKnown RBP15.31■□□□□ 0.04
SYNE1-223ENST00000476519 ITGA6P23229 1130 aa15.31■□□□□ 0.04
SYNE1-223ENST00000476519 SLFN5Q08AF3 891 aa15.31■□□□□ 0.04
SYNE1-223ENST00000476519 PODNQ7Z5L7 613 aa15.31■□□□□ 0.04
SYNE1-223ENST00000476519 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
SYNE1-223ENST00000476519 HIRAP54198 1017 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-223ENST00000476519 MICALL2Q8IY33 904 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 GPR101Q96P66 508 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-223ENST00000476519 MPHOSPH8Q99549 860 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 ANKRD2Q9GZV1 360 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 KCNQ5Q9NR82 932 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 DUOX1Q9NRD9 1551 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 MKRN1Q9UHC7 482 aaKnown RBP15.3■□□□□ 0.04
SYNE1-223ENST00000476519 LEMD3Q9Y2U8 911 aa15.3■□□□□ 0.04
SYNE1-223ENST00000476519 CNTNAP1P78357 1384 aa15.29■□□□□ 0.04
SYNE1-223ENST00000476519 ANKRD18BA2A2Z9 1011 aa15.29■□□□□ 0.04
SYNE1-223ENST00000476519 GRM8O00222 908 aa15.29■□□□□ 0.04
SYNE1-223ENST00000476519 C9orf78Q9NZ63 289 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-223ENST00000476519 LRRC37AA6NMS7 1700 aa15.29■□□□□ 0.04
SYNE1-223ENST00000476519 RASSF10A6NK89 507 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 CCT4P50991 539 aaKnown RBP15.28■□□□□ 0.04
SYNE1-223ENST00000476519 FOXO4P98177 505 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 IFIT5Q13325 482 aaKnown RBP15.28■□□□□ 0.04
SYNE1-223ENST00000476519 DEFB115Q30KQ5 88 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 FAM161AQ3B820 660 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 CDC37L1Q7L3B6 337 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 MRPL50Q8N5N7 158 aaKnown RBP15.28■□□□□ 0.04
SYNE1-223ENST00000476519 AGBL3Q8NEM8 1001 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 SRCIN1Q9C0H9 1055 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 TAF1P21675 1872 aa15.28■□□□□ 0.04
SYNE1-223ENST00000476519 ADAMTSL1Q8N6G6 1762 aa15.27■□□□□ 0.04
SYNE1-223ENST00000476519 CST9Q5W186 159 aa15.27■□□□□ 0.04
SYNE1-223ENST00000476519 RSBN1LQ6PCB5 846 aaPredicted RBP15.27■□□□□ 0.04
SYNE1-223ENST00000476519 SLC4A10Q6U841 1118 aa15.27■□□□□ 0.04
SYNE1-223ENST00000476519 TRMT2AQ8IZ69 625 aaKnown RBP15.27■□□□□ 0.04
SYNE1-223ENST00000476519 TRPM4Q8TD43 1214 aa15.27■□□□□ 0.04
SYNE1-223ENST00000476519 COL4A1P02462 1669 aa15.27■□□□□ 0.03
SYNE1-223ENST00000476519 LTBP1Q14766 1721 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 MED23Q9ULK4 1368 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 PTPRCP08575 1304 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 SHTN1A0MZ66 631 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 USP17L3A6NCW0 530 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 USP17L4A6NCW7 530 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 TRAF5O00463 557 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 CT47B1P0C2W7 299 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-223ENST00000476519 VEGFBP49765 207 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 USP17L1Q7RTZ2 530 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 SAMD7Q7Z3H4 446 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 COA1Q9GZY4 146 aa15.26■□□□□ 0.03
SYNE1-223ENST00000476519 ABT1Q9ULW3 272 aaKnown RBP15.26■□□□□ 0.03
SYNE1-223ENST00000476519 CACNA1FO60840 1977 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 ZNF804BA4D1E1 1349 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 WTIPA6NIX2 430 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-223ENST00000476519 MMP14P50281 582 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 ZNF280AP59817 542 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-223ENST00000476519 CCDC57Q2TAC2 916 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 ALDH1L2Q3SY69 923 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 LMBR1LQ6UX01 489 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 SSH1Q8WYL5 1049 aa15.25■□□□□ 0.03
SYNE1-223ENST00000476519 GLIS2Q9BZE0 524 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-223ENST00000476519 USP17L8P0C7I0 530 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 HSPA1AP0DMV8 641 aaKnown RBP15.24■□□□□ 0.03
SYNE1-223ENST00000476519 HSPA1BP0DMV9 641 aaKnown RBP15.24■□□□□ 0.03
SYNE1-223ENST00000476519 FMR1Q06787 632 aaKnown RBP eCLIP15.24■□□□□ 0.03
SYNE1-223ENST00000476519 CHRNDQ07001 517 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 TBC1D10BQ4KMP7 808 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-223ENST00000476519 EPHA10Q5JZY3 1008 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 CDCA7LQ96GN5 454 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 GMLQ99445 158 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 CHMP3Q9Y3E7 222 aa15.24■□□□□ 0.03
SYNE1-223ENST00000476519 UTYO14607 1347 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 CELF2O95319 508 aaKnown RBP15.23■□□□□ 0.03
SYNE1-223ENST00000476519 KCNJ4P48050 445 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 RBM26Q5T8P6 1007 aaKnown RBP15.23■□□□□ 0.03
SYNE1-223ENST00000476519 IFFO2Q5TF58 517 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 STRIP1Q5VSL9 837 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 C15orf52Q6ZUT6 534 aaKnown RBP15.23■□□□□ 0.03
SYNE1-223ENST00000476519 USP48Q86UV5 1035 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms